BAC Information

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BAC

Clone NameMSMg01-488N12
Chromosome6 (Build37)
Map Location 54,677,027 - 54,677,657
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC384386, 1200009O22Rik, Cpvl, LOC666305, Chn2, LOC100042056, Prr15, EG640926, Wipf3, Scrn1, Fkbp14, Plekha8, LOC100041292, 2410066E13Rik
Downstream geneZnrf2, Nod1, A030007L17Rik, Gars, Crhr2, Inmt, C330043M08Rik, Aqp1, Ghrhr, Adcyap1r1, LOC100042219, Neurod6, LOC100041339
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-488N12.T7 (MSMg01no488_n12.b1)MSMg01-488N12.TJ (MSMg01no488_n12.g1)
ACCAG567470AG567471
length771690
length of high quality
(start - end)
149 (65 - 213)632 (59 - 690)
definitionCHROMAT_FILE: MSMg01no488_n12.b1 PHD_FILE: MSMg01no488_n12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:52 2005CHROMAT_FILE: MSMg01no488_n12.g1 PHD_FILE: MSMg01no488_n12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCGCTAAACGACTCACAATCAGTAGCGGAGCCGCGGAATTCCATTC
TGCATATATATAGAGATTTAAAGATGAGATCATTGTCTGTGTACTAATTC
AAGACTTCCAACTTATACCAAATAAAAGGCTAAAGTGGGGATAGGTTAGG
TGCAGAACAGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTNNNAAAAANAAAAANAAAAAAAAGTTTTTTTTTTTAAGA
AANAGAAAGGTAGGGGGGGATATAGGTTTGTGGGAAGGAGAGGAAGAGAG
GATTTTTGGGTGAATTTAAGAGAGAGAGAGAAATATGGATGGGAGGAGGT
TTTTTTTTCCTCCCCTCCTTTGTTTGGGCGGTCCGCTTTTAAGTTTTTTA
TGGGTATTCCCCCCCCTTTTTTTTTTTTTTCTTTATCCTTCATTTGTTTT
TTTCGTTTTTCCTATTTTCATCTTTTTATCTCTTTTTTTTTTTTTTATTT
TTCGGGTTTCGTTTTTCCCCGATCCTTCGTTTCGCTTTTTGTGTTTACGA
CCCTCTTATTCCCCCTTCTCCTTTCCCTATTTACCTCTTTCTTTTTTATT
TCCTTTTCTCCCTATACCCCCTCTGCTATGGTTACTCTCCCCCTCTCCAT
CTCTTCTTCTTGTCTATCCATTCCTTCCCTTTTATTTTTTTTTTTTCACC
CACTTCTTTTTTAGTACTTTATCTCTTCTTAGTCTCACTTTTCTTTTCTC
CCCCCTTTTTCCTCCCATCTT
GCCTGGCGGCCGCCATTTCAAAGAAGGGAGGNGACACTATAGATTGCCCC
GAGGAGTTCATGGTGATTTGCCATACACCACATAGGATATAAGGTGCGGC
TCATCTGACGTCCTTTGCTTTCTTAATCTCTGGAGAAACCAGAGGTGATA
ATGAGAGCAATACCACCTACAGCAACATAAATGCGATGTTGACGTCTCTA
ACAGAGGAAGGGGCCTGGGCTCTGCAGATGCAGAAGTAGAAAGAGCTTAA
GTCAGGGTCGGTGATTACTCAAGCTGGAGTGCTTCTCTGCAGCATGGAAC
TTTTACCCGAGTGAGCTCACTAAAGGAAGGGGAGTGAGGAGCTCTAAAGA
CCATTATCAGACCTCTGCGGTCAGGTGCTGGATTAGACCTGACCCCTGAA
TGTGAGGAGCCACGAGAACAGAGAACAGACTCTGGTCCCACAGAGAAAAG
AAGCAAAGACTCCTTCCGCATGACCCTCCAGCTAGCAGAGGCAGAAACTG
CATCCCAATGATAATCCAGGTGGTACTGATGATAGACAAAAAAAAACCAA
GACTAGTAACCCCAGCCACAGGACAAGCTTGGAGCTTTTGCATCGCTGTG
GTGAGGCATTCTGACGAGTTAGTCCTGGAAAAGAGATCCACTGTGTCTTA
GAGTGGCCATTATTCAAGACTGAGCTACTCTGGGACCTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no488_n12.g1 MSMg01no488_n12.g1 CHROMAT_FILE:
MSMg01no488_n12.g1 PHD_FILE: MSMg01no488_n12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:52 2005
         (632 letters)



>mm_chr6_54676827_54677858
          Length = 1032

 Score = 1145 bits (592), Expect = 0.0
 Identities = 622/632 (98%), Gaps = 2/632 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   catggtgatttgccatacaccacataggatataaggtgcggctcatctgacgtcctttgc 60
           ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 831 catggtgatttgccacacaccacataggatataaggtgcggctcttctgacgtcctttgc 772

                                                                       
Query: 61  tttcttaatctctggagaaaccagaggtgataatgagagcaataccacctacagcaacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 tttcttaatctctggagaaaccagaggtgataatgagagcaataccacctacagcaacat 712

                                                                       
Query: 121 aaatgcgatgttgacgtctctaacagaggaaggggcctgggctctgcagatgcagaagta 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 aaatgcgatgttgacatctctaacagaggaaggggcctgggctctgcagatgcagaagta 652

                                                                       
Query: 181 gaaagagcttaagtcagggtcggtgattactcaagctggagtgcttctctgcagcatgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 gaaagagcttaagtcagggtcggtgattactcaagctggagtgcttctctgcagcatgga 592

                                                                       
Query: 241 acttttacccgagtgag-ctcactaaaggaaggggagtgaggagctctaaagaccattat 299
           || |  ||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 591 acatagacccgagtgagcct-actaaaggaaggggagtgaggagctctaaagaccattat 533

                                                                       
Query: 300 cagacctctgcggtcaggtgctggattagacctgacccctgaatgtgaggagccacgaga 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 cagacctctgcggtcaggtgctggattagacctgacccctgaatgtgaggagccacgaga 473

                                                                       
Query: 360 acagagaacagactctggtcccacagagaaaagaagcaaagactccttccgcatgaccct 419
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 472 acagagaacagactctggtcccacagagaaaagaagcaaagactccttctgcatgaccct 413

                                                                       
Query: 420 ccagctagcagaggcagaaactgcatcccaatgataatccaggtggtactgatgatagac 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ccagctagcagaggcagaaactgcatcccaatgataatccaggtggtactgatgatagac 353

                                                                       
Query: 480 aaaaaaaaaccaagactagtaaccccagccacaggacaagcttggagcttttgcatcgct 539
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 aaaaaaaacccaagactagtaaccccagccacaggacaagcttggagcttttgcatcgct 293

                                                                       
Query: 540 gtggtgaggcattctgacgagttagtcctggaaaagagatccactgtgtcttagagtggc 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 gtggtgaggcattctgacgagttagtcctggaaaagagatccactgtgtcttagagtggc 233

                                           
Query: 600 cattattcaagactgagctactctgggacctg 631
           ||||||||||||||||||||||||||||||||
Sbjct: 232 cattattcaagactgagctactctgggacctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space:   635684
Effective search space used:   635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)