Query= MSMg01no490_m01.b1 MSMg01no490_m01.b1 CHROMAT_FILE:
MSMg01no490_m01.b1 PHD_FILE: MSMg01no490_m01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:26 2005
(717 letters)
>mm_chr6_59471247_59472363
Length = 1117
Score = 1303 bits (674), Expect = 0.0
Identities = 704/714 (98%)
Strand = Plus / Plus
Query: 4 ggaattccctgctgttccaactcagtaaggacagtaattagtttgctgtgttctctagac 63
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccctgctgctgcaactcagtaaggacagtaattagtttgctgtgttctctagac 263
Query: 64 ctctttccttggtcaccactgcctattagtctgtgtgctttgcttggcctatcagaacca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctctttccttggtcaccactgcctattagtctgtgtgctttgcttggcctatcagaacca 323
Query: 124 tttataaagcaatatgaacaatgagaaaaggctggcaattctagtccataaatagacttg 183
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 324 tttataaagcaatatgaacaatgagaaaaggcttgcaattctagtccataaatagacttg 383
Query: 184 attaaaacctttaactttactctcaatttgcatattctataagcactctaaagatcagca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 attaaaacctttaactttactctcaatttgcatattctataagcactctaaagatcagca 443
Query: 244 tgaccaaatctgaattcttctataaacactcttctacctccagactggcagctctgtgct 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgaccaaatctgaattcttctataaacactcttctacctccagactggcagctctgtgct 503
Query: 304 aacaatgatttcattatttctcctgatcaggaaggaaacctagaattcaggatacacccc 363
||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 504 aacaatgttttcattatttctcctgatcaggcaggaaacctagaatacaggatacacccc 563
Query: 364 tttccttgctctagtctgtgaaggaatcaaacttatagactcccagggtatgtgtatgtc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tttccttgctctagtctgtgaaggaatcaaacttatagactcccagggtatgtgtatgtc 623
Query: 424 tcaattttacagatgacactgccctggttccatctggcattgcctctcaattgaccacct 483
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 624 tcaattttacagatgacactgccctggttccatctggaattgcctctcaattgaccatct 683
Query: 484 gtaaccttcatctcagttctccttccttcaaaatctcacccccagagacttttgtcagta 543
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 684 gtaaccttcatctcagttctccttccttcaaaatctcacccccagagacttttttcagta 743
Query: 544 agtagacagagaaagcctataataatgtttgctgtgtcctgtgactcctctcctgaaatc 603
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 agtagacagagagagcctataataatgtttgctgtgtcctgtgactcctctcctgaaatc 803
Query: 604 cctattcatcagtgacttgaagccactaatgtgaccctaaatccttggcaaccccaaagc 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 cctattcatcagtgacttgaagccactaatgtgaccctaaatccttggcaaccccaaagc 863
Query: 664 attcctcactgattttgattttgtgtcctatgatacctttagttacttgctctg 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 attcctcactgattttgattttgtgtcctatgatacctttagttacttgctctg 917
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 717
Length of database: 1117
Length adjustment: 10
Effective length of query: 707
Effective length of database: 1107
Effective search space: 782649
Effective search space used: 782649
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no490_m01.g1 MSMg01no490_m01.g1 CHROMAT_FILE:
MSMg01no490_m01.g1 PHD_FILE: MSMg01no490_m01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:26 2005
(649 letters)
>mm_chr6_59658640_59659688
Length = 1049
Score = 872 bits (451), Expect = 0.0
Identities = 592/651 (90%), Gaps = 24/651 (3%)
Strand = Plus / Plus
Query: 1 aggctgtaaggtctcattgtttgaattacctaattaactgctcttacatctgccaattat 60
|||||| ||||||| |||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 aggctgcaaggtcttattgcttgaattacctaattaactgctcttaaatctgccaattac 260
Query: 61 ctgagcagcagagaatagggaa-aattttctgatcctagtcaggacatccaagaaagaga 119
||||||| ||||||||||||| || |||||||| |||||||||||||||||||| ||||
Sbjct: 261 ctgagcaaaagagaatagggaagaa-tttctgattctagtcaggacatccaagaaggaga 319
Query: 120 ggaaatagagtagagaatg-accacaggtggaagaaggagtagagaaaccatgtggagag 178
||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||
Sbjct: 320 ggaaatagagtagagaa-gcaccacaggtggaagaaggaggagagaaaccatgtggagag 378
Query: 179 aacaggagaattttgagtgagtagtcatgaaaaaacacatgaaccatggtgggcctatgc 238
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 379 aacaggagaattttgagtgagtagccatgaaaaaacacacgaaccatggtgggcctatgc 438
Query: 239 aagatggtaaataatgcgtcattttctgggtattatctgtccagtcatatttgaagagtt 298
||||||| || |||| | ||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 439 aagatggcaagtaatacaccatttcctgggtattatctgtctagtcatatttgaagagtt 498
Query: 299 caaaacctacctacttaacttagaattacagtgtgttaataaaaatgcctggtatctctt 358
|||||||||||||||||| |||| ||| ||||||||||||||||||||||||| ||||||
Sbjct: 499 caaaacctacctacttaatttaggattgcagtgtgttaataaaaatgcctggtgtctctt 558
Query: 359 tttcagaacctaaaatgggctagaacaggcagaaaatgccaaaatgctgctatttatgta 418
|| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 559 ttacagaacctaaaatgggctagaacagggagaaaatgccaaaatgctgccatttatgt- 617
Query: 419 aaggcaaaagggaccaaagaaaatacccccccccaaaatattccacacatccaagaaaca 478
||||||||||||||| ||| |||| ||||||||||| |||||
Sbjct: 618 ------------------gaaaatacccccccctaaa-tattgcacacatccaaaaaaca 658
Query: 479 gcctgcatgttttaatgcacatatatacatctgtatgctttgttcctagggagagttgct 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 gcctgcatgttttaatgcacatatatacatctgtatgctttgttcctagggagagttgct 718
Query: 539 gcttaggagattagaaagttagccttgtacatgtgaccttgttggaggaaatgacactga 598
| |||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||
Sbjct: 719 gtttaggagattagaaagttggccttgtatatgtgacattgttggaggaaatgacactga 778
Query: 599 aggtgagctttgagatttcaaatcctaatgccaggtccagtgtctcttcct 649
|||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 779 aggtgagctttgagattttaaatcctaatgccaggttcagtgtctcttcct 829
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space: 663921
Effective search space used: 663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
