BAC Information

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BAC

Clone NameMSMg01-490N16
Chromosome6 (Build37)
Map Location 72,052,712 - 72,053,097
singlet/doubletsinglet
Overlap geneSt3gal5
Upstream geneLOC619547, Thnsl2, Fabp1, Smyd1, Krcc1, Gm1070, Cd8b1, LOC100042853, Cd8a, Rmnd5a, LOC100042863, Rnf103, Vps24, Jmjd1a, Ppia-ps6_731.1, LOC668029, LOC668034, Reep1, Mrpl35, Immt, Ptcd3, Rpo1-4, LOC668057
Downstream geneAtoh8, Sftpb, Usp39, 0610030E20Rik, Tmem150, 2500002L14Rik, Vamp5, Vamp8, Ggcx, Mat2a, Sh2d6, Capg, Rbed1, Retsat, Tgoln1, LOC100038890, Tcf3, Kcmf1, Tmsb10, Dnahc6
LinkOpen Mouse BAC browser

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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-490N16.T7 (MSMg01no490_n16.b1)MSMg01-490N16.TJ (MSMg01no490_n16.g1)
ACCAG568986AG568987
length750757
length of high quality
(start - end)
556 (71 - 626)382 (326 - 707)
definitionCHROMAT_FILE: MSMg01no490_n16.b1 PHD_FILE: MSMg01no490_n16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:34 2005CHROMAT_FILE: MSMg01no490_n16.g1 PHD_FILE: MSMg01no490_n16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTGTTCACTTCTGAGCCCCATTTTTTAATTGGGTTATTTGA
TTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTC
CCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGT
CTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTT
CATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTG
TTCTGTTCAGGAATTTTTCTTCTGTGCCCATATCTTCAAGGCTTTTCCCC
ACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGATCCTT
GATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTC
GCATTCTTCTACACGATAACAACCAGTTGTGGCAGCACCAATTGTTGAAA
ATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAA
GTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATT
GGTCTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATT
GCTCTGTAGTAAAGCTTTAAGTCTGGCATGGTGATTCCGCCAGAAGTTCT
TTTATCCTTGAGAAGACTTTTTGCTATCCTAAGGTTTTTGTTATTCCAGG

NCGATGAAGTGNGATTCCTGGNGGCCGCCTGTTTCAAACATGGXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATGTCTAGCATCTAAGTCGGGCAGC
TCGCAACTGCCTGTAACTCCAGCTGTGGATTATGCTGTGCCTTCTGCCAA
CCTCTGCGGTCACGTGCACTCACATGCACATACATACCCACGCGTGTGCT
ACACACGGAATTACAAAATAAAAGTAATGGCTGGCAAGTTGGCTCAGTGG
GCAAAGGCCTCCTCTGCCAAGTCTGACAACCTGAGTTTGATACCCAGGAC
CACCATGCTGGAAGGAGTTATTTTATAAAAAGAGGTCTCCACATGCATGA
TCTCCACGTGTATACCATGGCATGTGTGCATCCACACACACAGACACACA
CACACACTCATACACACACAGACACACACACACACACACACATAAAGTAA
TAAAATGAAAAAATAAGAATAAAAACATAAATCTTTAAAAAATTAAAAAG
AAACAGGTAGATTCAAGTTTCCACTTCTCTGGAAGATATTGACTTCTAAA
CTCACACGCACCTAGAGCCCACAGCTTCTAACCATATGTAATTCGTTAAT
GAATATTTTATAATCGGTTCGTCATACTCAGTCTTCAAAGCCTGCTCCCC
GCTCCCTCTCTTGTAAACCATGAGAAGTAGTTTTCTCAGTCTGTCCTCAC
TGGGTGTAGAAACGTTACCATAGACTAGCTCATTAGATTTCACCATAGCG
CTGTGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no490_n16.g1 MSMg01no490_n16.g1 CHROMAT_FILE:
MSMg01no490_n16.g1 PHD_FILE: MSMg01no490_n16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:34 2005
         (382 letters)



>mm_chr6_72052516_72053297
          Length = 782

 Score =  687 bits (355), Expect = 0.0
 Identities = 377/387 (97%), Gaps = 7/387 (1%)
 Strand = Plus / Plus

                                                                       
Query: 2   aaaaagaggtctccacatgcatgatctccacgtgtataccatggcatgtgtgcatccaca 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 aaaaagaggtctccacatgcatgatctccacgtgtataccatggcatgtgtgcatccaca 256

                                                                       
Query: 62  cacacagacacacacacacact----catacacacacagacacacacacacacacacaca 117
           |||||||||||||||||||||     || |||||||||||||||||||||||||||||||
Sbjct: 257 cacacagacacacacacacacagacacacacacacacagacacacacacacacacacaca 316

                                                                       
Query: 118 ta--aagtaataaaatgaaaaaataagaataaaaacataaatctttaaaaaattaaaaag 175
            |  |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 317 cacaaagtaataaaatgaaaaa-taagaataaaaacataaatctttaaaaaattaaaaag 375

                                                                       
Query: 176 aaacaggtagattcaagtttccacttctctggaagatattgacttctaaactcacacgca 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 aaacaggtagattcaagtttccacttctctggaagatattgacttctaaactcacacgca 435

                                                                       
Query: 236 cctagagcccacagcttctaaccatatgtaattcgttaatgaatattttataatcggttc 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 cctagagcccacagcttctaaccatatgtaattcgttaatgaatattttataatcggttc 495

                                                                       
Query: 296 gtcatactcagtcttcaaagcctgctccccgctccctctcttgtaaaccatgagaagtag 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gtcatactcagtcttcaaagcctgctccccgctccctctcttgtaaaccatgagaagtag 555

                                      
Query: 356 ttttctcagtctgtcctcactgggtgt 382
           |||||||||||||||||||||||||||
Sbjct: 556 ttttctcagtctgtcctcactgggtgt 582


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space:   288329
Effective search space used:   288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)