BAC Information

Click to search

BAC

Clone NameMSMg01-490O22
Chromosome6 (Build37)
Map Location 28,861,459 - 28,862,035
singlet/doubletsinglet
Overlap genenone
Upstream geneGrm8, 6530409C15Rik, AA407452, LOC100041304, LOC384360, Gcc1, Arf5, Fscn3, Pax4, LOC100041350, Snd1, Lrrc4
Downstream geneLOC100041367, Lep, Rbm28, D330027H18Rik, Impdh1, 2310016C08Rik, AI507611, BC048651, Calu, Opn1sw, 4921511K06Rik, Flnc, Atp6v1f, EG668210, Crim2, Irf5, Tnpo3, Tspan33, Smo, 4631427C17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-490O22.T7 (MSMg01no490_o22.b1)MSMg01-490O22.TJ (MSMg01no490_o22.g1)
ACCAG569046AG569047
length768873
length of high quality
(start - end)		577 (80 - 656)---
definitionCHROMAT_FILE: MSMg01no490_o22.b1 PHD_FILE: MSMg01no490_o22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:40 2005CHROMAT_FILE: MSMg01no490_o22.g1 PHD_FILE: MSMg01no490_o22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATGCG
CGGAATTCCAACTTCTGCAACCGTAAGCCCAAATTAAATCCTTTCTTTTG
TAAGTTTCCTTGGTCATGGTGTTTTATCACAGCAGTAGAAACTCTTGACT
AAAATAACTCTAAAGGTAGAAACGAGGGGGAAGAAGGGAGTCAACTCCTA
GAGACGTCTACGTCCCCTAGGCTGTGATCTGGTATGAGTAGACTCTTCAC
TCACGGGACTCTTGTCTTCACCGATACCACAGAGAACAATGCCTGTATCT
ATAGTCTGCCTCCAAGGCTATGCTTGCAGCCCCTAGTAAGCTGCTGCTTC
TCCTTTGTGGACTTTCCTGGTAAGTTCTAGAACTGTCTGATCAACTCTTT
TTTTTTTCTTTTTTTTTTAATTAGGTATTTTCCTCGTTTACATTTCCAAT
GTTATCCCAAAAGTTCCCCATACCTACCCCCCCCAATCCCCTTACCCACC
CACTCCCACTTCTTGGCCCTGGCGTTCCCCTGTACTGAGGCATATAAAGT
TTGCAAGTCCAAAGAGCCTCTCTTTCCAGTGATGGCTGACTAGGCCATCT
TTTGATACATATGCAGCTAGAGACAAGAGCTCCGGGGTACTGATTAGTTC
ATATTGTTGTTCCACCTATAGGGTGGCAGTTCCCTTTAGCTCCTTGGGTA
CTTTCTCTAGCTCCTCCATTGGGGGCCGTGTGACCCATCCCATAGCTGAC
TGGGAGCATCCACTTCTG

CCAATGCCCCGGTTAGGCCGGGGGGCCGCTTTTCTCACTATTTAAGGTGC
ACTATACATTTTCCCCCCGAACTTCTCCGGTGGAAAAATTTCCCTGGGTC
TTGTCCATGGGACATTGTTTTGAAAGCCACTTCTGCCTGGGGATCGCCTA
CTGGAACATACGGTCCCGATTCCTGCCTCGTCCCGCGCCTTTTTTCTTTG
TCCCTAACTTTACTACTCTCAACCCACATAGGTGCTCATGATTTAAATTT
TTGAACCCGAAGATCCTTTCAACCCGTAAACTTATGTTTGTGTCTTTTTG
TGTGCCATGGCCTGTCTTTTTTACTTGGGGTTTCAGACTGGATTCAACAT
CCCCCTTTTTATCTTTTTCTTGTTTTGCTGGCAGCTTCCTGGTCTTTGTT
ACGGATTAACGCATTTTTACTACCCCCCACGGCCCTTGTTTATTTGCATA
TCCATCTGTTTTTCTAATATTTTTTTTTTATCTTCCCTCTCTCTTCCTGT
TGCTATATATTGCGTCTCGCTTTATTAACTGCTTCACTTTGTATCGCCTC
TCTCTTGTTATTTTCCTCCCTGTTATTGAATCCCCTTCCCCATATCTCTT
TTCTTTCCCGCCGTCACTCTTCTCCTATTGTTTCGCGTATATCTCTTCAC
CTTTCCATCCTCTATTCTCCTTTTTCCTGTTTTTTCTTTTTGTATCCCTC
ATTCCTCCCCTTCTTTCTATCTCCTCTTTTTCTTTTACGCTCTTTTTTCC
CCTCTCTCACTATTATTCCCCCGTGTCTCGCTCCTCACTGTTTCTCCCCT
CTCTATTGTTATACCTCACTTATATACCTCTTGGCTTTTTAACCCACCTT
TGTTTTCTCCGNTCTTACTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no490_o22.b1 MSMg01no490_o22.b1 CHROMAT_FILE:
MSMg01no490_o22.b1 PHD_FILE: MSMg01no490_o22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:40 2005
         (577 letters)



>mm_chr6_28861259_28862235
          Length = 977

 Score =  963 bits (498), Expect = 0.0
 Identities = 558/580 (96%), Gaps = 6/580 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaattaaatcctttcttttgtaagtttccttggtcatggtgttttatcacagcagtaga 60
           |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaattaaatgctatcttttgtaagtttccttggtcatggtgttttatcacagcagtaga 260

                                                                       
Query: 61  aactcttgactaaaataactctaaaggtagaaacgagggggaagaagggagtcaactcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aactcttgactaaaataactctaaaggtagaaacgagggggaagaagggagtcaactcct 320

                                                                       
Query: 121 agagacgtctacgtcccctaggctgtgatctggtatgagtagactcttcactcacgggac 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagacgtctacatcccctaggctgtgatctggtatgagtagactcttcactcacgggac 380

                                                                       
Query: 181 tcttgtcttcaccgataccacagagaacaatgcctgtatctatagtctgcctccaaggct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcttgtcttcaccgataccacagagaacaatgcctgtatctatagtctgcctccaaggct 440

                                                                       
Query: 241 atgcttgcagcccctagtaagctgctgcttctcctttgtggactttcctggtaagttcta 300
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 441 atgcttgcagcccctagtaagctgctgcttctcctttgtggacttccctggtaagtccta 500

                                                                       
Query: 301 gaactgtctgatcaactcttttttttttctt---ttttttttaattaggtattttcctcg 357
           |||||||||||||||||||||||||||| ||   |||||||||||||||||||||||| |
Sbjct: 501 gaactgtctgatcaactctttttttttttttcctttttttttaattaggtattttccttg 560

                                                                       
Query: 358 tttacatttccaatgttatcccaaaagttccccatacctaccccccccaatccccttacc 417
           |||||||||||||||||||||||||||| ||||||||| ||||||| |  |||||| |||
Sbjct: 561 tttacatttccaatgttatcccaaaagtcccccatacccaccccccac--tcccct-acc 617

                                                                       
Query: 418 cacccactcccacttcttggccctggcgttcccctgtactgaggcatataaagtttgcaa 477
           ||||||||||| ||| |||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 618 cacccactccccctttttggccctggtgttcccctgtactggggcatataaagtttgcaa 677

                                                                       
Query: 478 gtccaaagagcctctctttccagtgatggctgactaggccatcttttgatacatatgcag 537
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gtccaaagggcctctctttccagtgatggctgactaggccatcttttgatacatatgcag 737

                                                   
Query: 538 ctagagacaagagctccggggtactgattagttcatattg 577
           |||||||||||||||||||||||||| |||||||||||||
Sbjct: 738 ctagagacaagagctccggggtactggttagttcatattg 777


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space:   548289
Effective search space used:   548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |