BAC Information

Click to search

BAC

Clone NameMSMg01-492L18
Chromosome6 (Build37)
Map Location 92,498,113 - 92,498,505
singlet/doubletsinglet
Overlap genePrickle2
Upstream geneSlc6a6, Grip2, C130022K22Rik, 4930590J08Rik, Fgd5, Nr2c2, Mrps25, Zfyve20, Trh, LOC665805
Downstream geneLOC545866, A730049H05Rik, LOC384461, LOC100043253
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492L18.T7 (MSMg01no492_l18.b1)MSMg01-492L18.TJ (MSMg01no492_l18.g1)
ACCAG570419AG570420
length726830
length of high quality
(start - end)
446 (62 - 507)119 (69 - 187)
definitionCHROMAT_FILE: MSMg01no492_l18.b1 PHD_FILE: MSMg01no492_l18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:02 2005CHROMAT_FILE: MSMg01no492_l18.g1 PHD_FILE: MSMg01no492_l18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAGGATCCGCGGAATTC
AGACTCTCTTCCCTCACCCCATCTTTCTTAAAACATTTTAACAAGATTTT
GAATGATCACTTTTTATACAAAAGAAGCATTTGAATCATTGGTAGGTTTT
TTTTTCACTTTGTGTTTGCTTTTGTTGTTGTCATTGTTTGATACATAATT
TTTGTTAGATAGCCCAGGCTAGCCTTGAACCTCATGACCCTCCCAGCTTG
CCTCCTCCCTGAGTCTTAGAATTATAAGTGTGTACCACACCCAGTTCATT
GTTAGAAAAGAAAAGCATCTGTGGCTAGCCTCCTTCCCTAAGACATCATT
CTCCTGTGTCACTGCTCATGTGTGCCTTTGATTGGCGAGCCTATGGAGAA
AGAGGCACATCCTATCAAACATAGAGACCTCCTGACTTCTAGCACTATAC
CACAGGAGCATTTAATGAATGAACAAAAGCAGTGAAATATCATCGCATGA
ATTCTAATAAGGAGGAAGCCTTGGCAATCATGCAATGTTTTTTAACTTGT
CTATTCTCTGGACTTCACTCTGTTATATTGTTTGTTCTCATTGTATCTGT
AAGACCTGTTCCTTGGTCTGGTATGCAGTACGTATGCAATATGGTAAGTA
TGCATTACCCACATGAACTGAAAAATCCAAAGGCCGATTGCTGGCTCCTA
TGTCAATGGTTCTTTTTGCCCACATC
CTGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGATCCCTAGCCCAACATAAGATCCAGGTGTGG
CAGTGCACATCTGTAACCTCAGCCCTGGGAGGAAGAGGAAGAAGTGGAGG
AGGAGGAAGACTGGTGGTGGTGGTGGTGGTAGGTATTTTCCCCTTTCCTT
TTTTTTTCTTTTTTCTTCCTCTTCCTTCTTCTTTTCTTTTTCTTTCCCTT
TTTCTTCTTTTTTTTTTCCTCTTTCTTTCTTTCTTTTTTTTCTTTCTTTC
CTCTCTTCCTTTTTTTTTTTCTTCTTTCTCTCCCCTTTTTTTCCCTCTTT
TCTTTTTTCTTTTTTCTCTCTCCCCCCTCTTTTCTGCCTCTTTCCTCTCC
TTTTTTTTTTCCTTCCCTTCTCTTTTTCCCCCCCTCCTTCTTTTTTTTTT
TTCTCTCCCCTCCTTTTTTTTCTCCTTTTTCTTTCCCGTTTTCTCTCTCT
TCTTTTCCCCTCTTTTCTTTCCCTCCTTTTCTTTTCGCCTCCCCTCTCCT
TTTTCCCTCTTCTTCTCTCTCTTTTTTCTTTTTTCCTCTTTCCCTTTCCT
TCCCCTCCCTTCTCCTCCCTCTTCTCCTTCCTTCTTCTTTCTCTCTCTCT
TCTCCTTTCATCTTTTCCCTTCGTTTCTCATTTCTTCTTCCTCCCCCCCT
TTTTTCTTCTTTTTCCTTTTTATTTCCCCTTTTTTCTTTTCACTTCCTCT
TTTCCCTTTTCTCCCCCTTTCTTCCTTCTCCTCTCCTTTTCTCCTTTCTT
TTCCCTTCTCTCTTCTTTTCCCTCCTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_l18.b1 MSMg01no492_l18.b1 CHROMAT_FILE:
MSMg01no492_l18.b1 PHD_FILE: MSMg01no492_l18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:02 2005
         (446 letters)



>mm_chr6_92497660_92498505
          Length = 846

 Score =  698 bits (361), Expect = 0.0
 Identities = 380/393 (96%), Gaps = 12/393 (3%)
 Strand = Plus / Minus

                                                                       
Query: 66  gcatttgaatcattggtagg---tttttttttcactttgtgtttgcttttgttgttgtca 122
           ||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||
Sbjct: 846 gcatttgaatcattggtaggttttttttttttcactttgtgtttgcttttgttgttgtca 787

                                                                       
Query: 123 ttgtttgatacataatttttgttagatagcccaggctagccttgaacctcatgaccctcc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 ttgtttgatacataatttttgttagatagcccaggctagccttgaacctcatgaccctcc 727

                                                                       
Query: 183 cagcttgcctcctccctgagtcttagaattataagtgtgtaccacacccagttcattgtt 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 cagcttgcctcctccctgagtcttagaattataagtgtgtaccacacccagttcattgtt 667

                                                                       
Query: 243 agaaaagaaaa---------gcatctgtggctagcctccttccctaagacatcattctcc 293
           |||||||||||         ||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 agaaaagaaaagcatctgtggcatctgtggctagcctccttccctaagacatcattctcc 607

                                                                       
Query: 294 tgtgtcactgctcatgtgtgcctttgattggcgagcctatggagaaagaggcacatccta 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 tgtgtcactgctcatgtgtgcctttgattggcgagcctatggagaaagaggcacatccta 547

                                                                       
Query: 354 tcaaacatagagacctcctgacttctagcactataccacaggagcatttaatgaatgaac 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 tcaaacatagagacctcctgacttctagcactataccacaggagcatttaatgaatgaac 487

                                            
Query: 414 aaaagcagtgaaatatcatcgcatgaattctaa 446
           |||||||||||||| ||||||||||||||||||
Sbjct: 486 aaaagcagtgaaatctcatcgcatgaattctaa 454


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space:   364496
Effective search space used:   364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)