Query= MSMg01no493_n14.b1 MSMg01no493_n14.b1 CHROMAT_FILE:
MSMg01no493_n14.b1 PHD_FILE: MSMg01no493_n14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:32 2005
(654 letters)
>mm_chr6_38325755_38326808
Length = 1054
Score = 1178 bits (609), Expect = 0.0
Identities = 640/651 (98%), Gaps = 4/651 (0%)
Strand = Plus / Plus
Query: 4 ggaattcacccagataacca-aa-caatgttctcacaacctgagcccagtcaccagaatc 61
|||||||||||||| || | || ||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcacccagaaaa--agaagcaatgttctcacaacctgagcccagtcaccagaatc 261
Query: 62 catataaaaataaggagataataagccccgcagatttgtccctgacatcagcatacctgt 121
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 catataaaaataaggagacaataagccccgcagatttgtccctgacatcagcatacctgt 321
Query: 122 catctattcctttcccagagctcactaggtcatctagatggaggaggggtctgacattct 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 catctattcctttcccagagctcactaggtcatctagatggaggaggggtctgacattct 381
Query: 182 ctccctccggagcacttggattacagaggtgaaccactacactatgtctttatgtgggta 241
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 382 ctgcctccggagcacttggattacagaggtgaaccactacactatgtctttatgtgggca 441
Query: 242 ctggagatccaaacttgggtccttattctgtgggccttgggctttaacaactgagccatt 301
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 442 ctggagatccaaacttgggtccttattctgtgggccaagggctttaacaactgagccatt 501
Query: 302 tccccagccccaaacatttgttttgacgaatattcataaatctagtgatcaaaatgaaaa 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tccccagccccaaacatttgttttgacgaatattcataaatctagtgatcaaaatgaaaa 561
Query: 362 agctaagaacacttaaattgattaaatgttactgttatctgtagtggaaacatggaaatt 421
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 562 agctaagaacacttaaattgattaaaagttactgttatctgtagtggaaacatggaaatt 621
Query: 422 tctttcttgtttggttggggttgtttgttttgtttgttttgagatacgctttcactgtgt 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tctttcttgtttggttggggttgtttgttttgtttgttttgagatacgctttcactgtgt 681
Query: 482 agccctggctgtcctctgtagaccatgctggcctcaaactcacagagatcatctgcctct 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 agccctggctgtcctctgtagaccatgctggcctcaaactcacagagatcatctgcctct 741
Query: 542 accttctgggtgctgggattaaaggtgtgctccaccactgccctacatggaaacgtggag 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 accttctgggtgctgggattaaaggtgtgctccaccactgccctacatggaaacgtggag 801
Query: 602 gtttcttttcaggagatttcctgtttctttttaaggaaaatcaaccttacc 652
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 gtttcttttcaggagatttcctgtttctttttaaggaaaatcaaccttacc 852
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space: 672336
Effective search space used: 672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no493_n14.g1 MSMg01no493_n14.g1 CHROMAT_FILE:
MSMg01no493_n14.g1 PHD_FILE: MSMg01no493_n14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:32 2005
(599 letters)
>mm_chr6_38462079_38463076
Length = 998
Score = 1143 bits (591), Expect = 0.0
Identities = 597/599 (99%), Gaps = 1/599 (0%)
Strand = Plus / Minus
Query: 1 tttttgtacaccatcaagtcactgcaaattgttttattattttaaaacctcaacctctgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 tttttgtacaccatcaagtcactgcaaattgttttattattttaaaacctcaacctctgc 739
Query: 61 tgacagtggaacacttaaacctaagttaacccaataatacaagagacacagagtaatatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 tgacagtggaacacttaaacctaagttaacccaataatacaagagacacagagtaatatt 679
Query: 121 tacattcctctttatttaatacaacaaacacattaacatatacaaaaagaaaaactcact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tacattcctctttatttaatacaacaaacacattaacatatacaaaaagaaaaactcact 619
Query: 181 catgtaaaaaggtcctgtcttggaggatagccaggaaacatctacactgaatcgaataag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 catgtaaaaaggtcctgtcttggaggatagccaggaaacatctacactgaatcgaataag 559
Query: 241 gctctcattttaaaacaggtttgctagttacacctggaatatgaacaaggctgtcgcaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gctctcattttaaaacaggtttgctagttacacctggaatatgaacaaggctgtcgcaaa 499
Query: 301 gcaaaatgaacacagacatccccgcactgaggagtgcactgtggggctagtttaataagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gcaaaatgaacacagacatccccgcactgaggagtgcactgtggggctagtttaataagt 439
Query: 361 tctcagatgcatgtttggaaatatctaaaattcaccagcggtcctatgaaatgtgaggct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tctcagatgcatgtttggaaatatctaaaattcaccagcggtcctatgaaatgtgaggct 379
Query: 421 cttttgttgctttttatttattttataatcagccccccctttttttcctctctctctctc 480
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 378 cttttgttgctttttatttattttataatcagccccccctttttct-ctctctctctctc 320
Query: 481 ttaggaaagttttaagagctctaaaaccaggaatcttcaaagtgtggaagctttaatgcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ttaggaaagttttaagagctctaaaaccaggaatcttcaaagtgtggaagctttaatgcc 260
Query: 541 agaggtcaaagaatgttggagctagaccaagaacacaaaggcaatatggccagaggaga 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 agaggtcaaagaatgttggagctagaccaagaacacaaaggcaatatggccagaggaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 998
Length adjustment: 10
Effective length of query: 589
Effective length of database: 988
Effective search space: 581932
Effective search space used: 581932
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
