BAC Information

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BAC

Clone NameMSMg01-494O09
Chromosome6 (Build37)
Map Location 115,984,252 - 115,984,787
singlet/doubletsinglet
Overlap geneTmcc1
Upstream gene1500001M20Rik, LOC100043420, Syn2, Timp4, Pparg, Tsen2, 2510049J12Rik, Mkrn2, Raf1, LOC100043759, D830050J10Rik, Tmem40, EG620848, Cand2, Rpl32, BC060267, Mbd4, Ift122, Rho, H1foo, Plxnd1
Downstream geneLOC100043425, EG666634, EG666648, D6Wsu116e, Anubl1, March8, Alox5, LOC100043432, Olfr211, Olfr212, Olfr213, EG434080, Olfr214, Olfr215, Zfp422, Rassf4, 8430408G22Rik, C230095G01Rik, LOC100043439
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-494O09.T7 (MSMg01no494_o09.b1)MSMg01-494O09.TJ (MSMg01no494_o09.g1)
ACCAG572069AG572070
length725726
length of high quality
(start - end)
573 (63 - 635)406 (67 - 472)
definitionCHROMAT_FILE: MSMg01no494_o09.b1 PHD_FILE: MSMg01no494_o09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:51 2005CHROMAT_FILE: MSMg01no494_o09.g1 PHD_FILE: MSMg01no494_o09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCAT
ATTTCCTATAACATCACTCCAGGTGCATGTGTCAGAGAAATGGAACTTCT
TTGTACATATGACATGAACAGGGATGAACTTATAGTACCATGTGACAGTG
TCCTAGATATTTCCAGATTCTGTATCCTAAAGTGCTTGCAACTTGCTGTT
CAGTTTAGTGTTTCCCACTGTACTTGATACTCACAGGATATCAGGATATG
AAGCAGGGGCTATGCTTTTCCACTACCTGTACCTAATTCCTAAGCCCTGA
CTTTTGTCTTCATCCCCTAATGTGGCTACTACAGACTGTTCACTTGGGAA
GCAAAGTGCCCATGATCTTTTCATCCTTTTTCCACATGTTAAATACACAG
GCCACATACAGAGGTGCACACGCGTAATCCCAGCACTTGGGATGCTGAGG
CAAGAAGACTGTGAGTTCCAGACCAGCCTGGTTATACACAGCAAGTTTCA
AGCCAGACCGGGATACACAGTGAAATTGTTACACTTATCTAAAACAAAAC
AAATGAAAAACATTTCAAAGGGGCTGGCACTGTAGCACAGTTGGTACAGC
AGGCCTTACCCAGAATGCATGAAGCCTTTCAGGTCCATCTTCACCACTAC
ACACGCACGCACACGCACACGCACACGCACACGCACACACACACACACAC
ATTGTGTGTGTGAATAGTAGTCCAG
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTAGCTCTTCCTACACCATCTCTGCCTGGATACT
GCCATGCTCCTGCCTTGATGAAAAAGGACTGAACCTCTGAGGTTGTAAGC
CAACTCTAATTAGAGAGTTGCCTTGGTCATGGTGTCTGTTCACAGCAGTA
AAACCCTAACTTAGAAGTTGGTACCAGGGACTGGGATATTGCTGTGATAG
GCCTAACCATATCTTTGTTTAGAAGAATGTAGATTTTGGGACTTTGGATT
TGGAAATCCTATTAGGAATATGGAATATGGTAGTGCTGAGGGTAATTTGA
ACTGTGTAGGTCTGCTGTCCCAAGAAGTTTCAATGGAAAAGAATGTTATT
ATGTCATCTACACACTGTTTTTGTGATATTTGGATGAAGAACATGGCTGC
CTTTTACCATTGTTCAAAGGTCTGCCTGAGACTAAAATGAAGAGATTTAG
ATTAGTTACTTTGACAAAGTCTTCAAAACAGCCTGGTATAAATTCTGTTG
TGTGCTTACTAAAATTAACTCTTATGAAAAGAACATTTTGATGAAAAGGA
GCAAGCTTAGAAAGGAAAAGTATGAAACATATGGTAATAATAAAGGGACT
CCATGAAGTAAAATGGAGCTGAATCCCGTGTTCAAGGAGAAAAAGGTAGC
GTTGATCTCCGGGTAAGATTCTACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no494_o09.b1 MSMg01no494_o09.b1 CHROMAT_FILE:
MSMg01no494_o09.b1 PHD_FILE: MSMg01no494_o09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:51 2005
         (573 letters)



>mm_chr6_115984252_115985224
          Length = 973

 Score = 1029 bits (532), Expect = 0.0
 Identities = 535/536 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcactccaggtgcatgtgtcagagaaatggaacttctttgtacatatgacatgaacagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 atcactccaggtgcatgtgtcagagaaatggaacttctttgtacatatgacatgaacagg 477

                                                                       
Query: 61  gatgaacttatagtaccatgtgacagtgtcctagatatttccagattctgtatcctaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 gatgaacttatagtaccatgtgacagtgtcctagatatttccagattctgtatcctaaag 417

                                                                       
Query: 121 tgcttgcaacttgctgttcagtttagtgtttcccactgtacttgatactcacaggatatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tgcttgcaacttgctgttcagtttagtgtttcccactgtacttgatactcacaggatatc 357

                                                                       
Query: 181 aggatatgaagcaggggctatgcttttccactacctgtacctaattcctaagccctgact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 aggatatgaagcaggggctatgcttttccactacctgtacctaattcctaagccctgact 297

                                                                       
Query: 241 tttgtcttcatcccctaatgtggctactacagactgttcacttgggaagcaaagtgccca 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 tttgccttcatcccctaatgtggctactacagactgttcacttgggaagcaaagtgccca 237

                                                                       
Query: 301 tgatcttttcatcctttttccacatgttaaatacacaggccacatacagaggtgcacacg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 tgatcttttcatcctttttccacatgttaaatacacaggccacatacagaggtgcacacg 177

                                                                       
Query: 361 cgtaatcccagcacttgggatgctgaggcaagaagactgtgagttccagaccagcctggt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 cgtaatcccagcacttgggatgctgaggcaagaagactgtgagttccagaccagcctggt 117

                                                                       
Query: 421 tatacacagcaagtttcaagccagaccgggatacacagtgaaattgttacacttatctaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 tatacacagcaagtttcaagccagaccgggatacacagtgaaattgttacacttatctaa 57

                                                                   
Query: 481 aacaaaacaaatgaaaaacatttcaaaggggctggcactgtagcacagttggtaca 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56  aacaaaacaaatgaaaaacatttcaaaggggctggcactgtagcacagttggtaca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space:   542169
Effective search space used:   542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)