BAC Information

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BAC

Clone NameMSMg01-495L14
Chromosome6 (Build37)
Map Location 71,241,897 - 71,442,609
singlet/doubletdoublet
Overlap geneGm1070, Cd8b1, LOC100042853, Cd8a, Rmnd5a, LOC100042863
Upstream geneIgk, Igkv8-22, Igk-V8-21, EG667840, Igk-V19-20, Igk-V8-19, Igk-V8-18, LOC667863, Igk-V19-17, Igk-V8-16, Igk-V19-15, LOC667872, LOC620497, Igk-V19-14, LOC667889, Igk-V19-13, LOC667902, Igkv3-12-1, Igk-V21-12, Igk-V21-11, Igk-V21-10, Igk-V21-9, Igk-V21-8, Igk-V21-7, Igk-V21-6, Igk-V21-5, Igk-V21-4, Igk-V21-3, Igk-V21-2, Igk-V21-1, Igk-J1, Igk-J2, Igk-J3, Igk-J4, Igk-J5, Igk-C, Rpia, Eif2ak3, 1700011F03Rik, LOC232077, LOC619547, Thnsl2, Fabp1, Smyd1, Krcc1
Downstream geneRnf103, Vps24, Jmjd1a, Ppia-ps6_731.1, LOC668029, LOC668034, Reep1, Mrpl35, Immt, Ptcd3, Rpo1-4, LOC668057, St3gal5, Atoh8, Sftpb, Usp39, 0610030E20Rik, Tmem150, 2500002L14Rik, Vamp5, Vamp8, Ggcx, Mat2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495L14.T7 (MSMg01no495_l14.b1)MSMg01-495L14.TJ (MSMg01no495_l14.g1)
ACCAG572700AG572701
length765751
length of high quality
(start - end)
579 (77 - 655)648 (82 - 729)
definitionCHROMAT_FILE: MSMg01no495_l14.b1 PHD_FILE: MSMg01no495_l14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:50 2005CHROMAT_FILE: MSMg01no495_l14.g1 PHD_FILE: MSMg01no495_l14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,442,031 - 71,442,609)(71,241,897 - 71,242,544)
sequence
NATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAGATGCGC
GGAATTCCAGGTGATTTCCTAACCAGCAAGGAAAAGCATGAACAACCCTA
AACCAGGGGTGAAATTTTTAGGGAGAGAGTGTGACCCTCAATCAGGCAGC
AAATGAGCCATGGAAAACAAAGAATGGATCATAAAATGTAGACAAAGGAT
AGTACCCCTTTATAATGCAGTTAACAAAGGCATCTCGGTGTACAGCTAGT
GGAGGAGCTAGGAAGGAAGAAGCCTAGGAGCAGGGTGGGCAGGAATGTAC
AGCTTCAGACTTACAGAACAGTGTGGTGTTTTTCCAGGGCAGCAGACCAC
GTGGAGACTGTATTAAACTGTTCCTGCTGACAGACTTGGCTCTGTAATTT
CAGCATTCTTGATTTCACGGTATAGCACTGTTATATGGTGGCATTGCTAG
TCAAGTCTAAACACATAAATGATATGCCTTGCCTCGAAGGAATGCATTTT
AGTAATAATAGACTCTGTCAATACACAGAGGCAATAACAGAAAAGAAGAA
CAGGTAGGGAAAGCTGGGTGGATGAGCTGAGGATGGAGCCAGACAGGCCA
GAGTTTAAAAGTTAAAAAAATCAAATCATGAGAGGGAAGAGGAGAGAGAG
GGAGGAANGNANNNNTTTTTTNTTTTTTNNNTNTTTTTTTTTTTTTTTTT
TTTTTTTTTNTTNTTGNNTTGTTTTTTTNGTTTTTGTGGTTGTTTTGTNG
NGGGGTGTTTTTTGG
NNCCTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTATTTTTTTTTCTTCAA
AGAAACAAAAAGAAAGATAACTTGAAAACCCAAGGACTATTACAAAAAAG
GAAAGGGGATGAGTGAAGAGCAAAAGTGGGGAGTTCCAAAAGGGGGATAT
TGCCATGCAGGGACAGCAGCAAGGGGCCAGAGACATGGGCTATGTGTGAA
TTCATGGAAGACAGAAGAACTCCAGAGTCGAGTTCATTAGCTGTACTGTG
GGACAGTCACAGTGGAGAAAAGAGCTGCTTTTGGTAGACTGGGAGGGGAA
CTCTAGACTGGTCAGTGTTTCAGTGTCACCATGTCCTGGAATAGTTGCAG
TTGAGTTTTACTGTGGCTAGCAGTAGTCTATCCCCGAGGCAATGACAGTC
TCACCCTGTGTCAGAAATATCCCAGCATGACCCATCCTACACCAGCATCT
ACATTTTACAGCTGGGTTTGTTAGGATTAACGCTTTTGACAAGAAAACGA
TCTTGCCTGAAGACAGTGGTGCCTTTGTCCTGAGCATGAGACACCAGATC
TTGGGTTCAGACTCCAACTTAAAGAACCCAACCTAAGGCTGTACTCTCTA
GCTCCTGTTTCCAGATTATTCTCCAACAAACCTGTGTCTAGCACCAGGTT
ACAAGCCTGTCCCTGGCACTTTATTTCCTAACACCCACCAATCATGAGGA
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_l14.b1 MSMg01no495_l14.b1 CHROMAT_FILE:
MSMg01no495_l14.b1 PHD_FILE: MSMg01no495_l14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:50 2005
         (579 letters)



>mm_chr6_71441831_71442809
          Length = 979

 Score = 1081 bits (559), Expect = 0.0
 Identities = 574/579 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaggaaaagcatgaacaaccctaaaccaggggtgaaatttttagggagagagtgtgacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 caaggaaaagcatgaacaaccctaaaccaggggtgaaatttttagggagagagtgtgacc 720

                                                                       
Query: 61  ctcaatcaggcagcaaatgagccatggaaaacaaagaatggatcataaaatgtagacaaa 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 ctcaatcagggagcaaatgagccatggaaaacaaagaatggatcataaaatgtagacaaa 660

                                                                       
Query: 121 ggatagtacccctttataatgcagttaacaaaggcatctcggtgtacagctagtggagga 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 ggatagtacccctttataacgcagttaacaaaggcatctcggtgtacagctagtggagga 600

                                                                       
Query: 181 gctaggaaggaagaagcctaggagcagggtgggcaggaatgtacagcttcagacttacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 gctaggaaggaagaagcctaggagcagggtgggcaggaatgtacagcttcagacttacag 540

                                                                       
Query: 241 aacagtgtggtgtttttccagggcagcagaccacgtggagactgtattaaactgttcctg 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 aacagtgtggtggttttccagggcagcagaccacgtggagactgtattaaactgttcctg 480

                                                                       
Query: 301 ctgacagacttggctctgtaatttcagcattcttgatttcacggtatagcactgttatat 360
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 479 ctgacagacttggctctgtaatttcagcattcttgatttcacagtatagcactgttatat 420

                                                                       
Query: 361 ggtggcattgctagtcaagtctaaacacataaatgatatgccttgcctcgaaggaatgca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 ggtggcattgctagtcaagtctaaacacataaatgatatgccttgcctcgaaggaatgca 360

                                                                       
Query: 421 ttttagtaataatagactctgtcaatacacagaggcaataacagaaaagaagaacaggta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ttttagtaataatagactctgtcaatacacagaggcaataacagaaaagaagaacaggta 300

                                                                       
Query: 481 gggaaagctgggtggatgagctgaggatggagccagacaggccagagtttaaaagttaaa 540
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 299 gggaaagctgggtggatgagctgaggatggagccagacaggctagagtttaaaagttaaa 240

                                                  
Query: 541 aaaatcaaatcatgagagggaagaggagagagagggagg 579
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 aaaatcaaatcatgagagggaagaggagagagagggagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space:   551361
Effective search space used:   551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no495_l14.g1 MSMg01no495_l14.g1 CHROMAT_FILE:
MSMg01no495_l14.g1 PHD_FILE: MSMg01no495_l14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:50 2005
         (648 letters)



>mm_chr6_71241697_71242744
          Length = 1048

 Score = 1222 bits (632), Expect = 0.0
 Identities = 644/648 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtatttttttttcttcaaagaaacaaaaagaaagataacttgaaaacccaaggactatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtatttttttttcttcaaagaaacaaaaagaaagataacttgaaaacccaaggactatt 260

                                                                       
Query: 61  acaaaaaaggaaaggggatgagtgaagagcaaaagtggggagttccaaaagggggatatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaaaaaaggaaaggggatgagtgaagagcaaaagtggggagttccaaaagggggatatt 320

                                                                       
Query: 121 gccatgcagggacagcagcaaggggccagagacatgggctatgtgtgaattcatggaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccatgcagggacagcagcaaggggccagagacatgggctatgtgtgaattcatggaaga 380

                                                                       
Query: 181 cagaagaactccagagtcgagttcattagctgtactgtgggacagtcacagtggagaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagaagaactccagagtcgagttcattagctgtactgtgggacagtcacagtggagaaaa 440

                                                                       
Query: 241 gagctgcttttggtagactgggaggggaactctagactggtcagtgtttcagtgtcacca 300
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 gagctgcttttggtagactgggagggggactctagactggtcagtgtttcagtgtcacca 500

                                                                       
Query: 301 tgtcctggaatagttgcagttgagttttactgtggctagcagtagtctatccccgaggca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtcctggaatagttgcagttgagttttactgtggctagcagtagtctatccccgaggca 560

                                                                       
Query: 361 atgacagtctcaccctgtgtcagaaatatcccagcatgacccatcctacaccagcatcta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgacagtctcaccctgtgtcagaaatatcccagcatgacccatcctacaccagcatcta 620

                                                                       
Query: 421 cattttacagctgggtttgttaggattaacgcttttgacaagaaaacgatcttgcctgaa 480
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 621 cattttacagctgggtttgttaggattaacacttttgacaagaaaacgatcttgcctgaa 680

                                                                       
Query: 481 gacagtggtgcctttgtcctgagcatgagacaccagatcttgggttcagactccaactta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gacagtggtgcctttgtcctgagcatgagacaccagatcttgggttcagactccaactta 740

                                                                       
Query: 541 aagaacccaacctaaggctgtactctctagctcctgtttccagattattctccaacaaac 600
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 741 aagaacccaacctaaggctgtactctctagctcctgtttccagattattccccaacaaac 800

                                                           
Query: 601 ctgtgtctagcaccaggttacaagcctgtccctggcactttatttcct 648
           ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 801 ctgtgtctagcaccaggttacaagcctgtccctggaactttatttcct 848


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space:   662244
Effective search space used:   662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)