Query= MSMg01no495_n13.b1 MSMg01no495_n13.b1 CHROMAT_FILE:
MSMg01no495_n13.b1 PHD_FILE: MSMg01no495_n13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:59 2005
(548 letters)
>mm_chr6_84467188_84468135
Length = 948
Score = 468 bits (242), Expect = e-136
Identities = 285/316 (90%), Gaps = 27/316 (8%)
Strand = Plus / Minus
Query: 1 tcagatacaatatacccacagacttgttcctaacaattgtcaataagtaaaagattttta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tcagatacaatatacccacagacttgttcctaacaattgtcaataagtaaaagattttta 257
Query: 61 aatattaaaaaagaaaaagaagataatggaaggttctagattcttgggagg--------- 111
||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 256 aatattaaaaaagaaaaagaagacaatggaaggttctagattcttgggaggtttttgttt 197
Query: 112 ------ttttttttggtggca------------gtttgtttgtttgtttgtttgttttca 153
||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 196 ttgtttttttttttggtggcagtttgtttgtttgtttgtttgtttgtttgtttgttttcc 137
Query: 154 agacagggtttctctgtgtagctttggctgttctggaactatctctgtagaccaggctgg 213
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 136 agacagggtttctctgtgtagctttgtctgttctggaactatctctgtagaccaggctgg 77
Query: 214 cctcaaatgcagacagatcgcctgcttctgtctcctgagtgctgagaataaaggcttgtg 273
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 76 cctcaaatgcagacagatcgcctgcttctgcctcctgagtgctgagaataaaggcttgtg 17
Query: 274 ctaccactgcctggtc 289
||||||||||||||||
Sbjct: 16 ctaccactgcctggtc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space: 504644
Effective search space used: 504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no495_n13.g1 MSMg01no495_n13.g1 CHROMAT_FILE:
MSMg01no495_n13.g1 PHD_FILE: MSMg01no495_n13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:00 2005
(312 letters)
>mm_chr6_84395679_84396388
Length = 710
Score = 451 bits (233), Expect = e-131
Identities = 276/291 (94%), Gaps = 2/291 (0%)
Strand = Plus / Plus
Query: 22 gaaagtgatttttaagttgacttttcacataccccaagtctgagttcattgtgaaatcac 81
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 222 gaaagcgatttttaagttgacttttcacacaccccaagtctgagttcattgtgaaatcac 281
Query: 82 accgcctttggtactccactctccgtctttgcatgagttaaaatgtaccggttctcaccg 141
|| ||||||||||||| ||||| |||||| ||||||||||||||| |||||||||||
Sbjct: 282 actgcctttggtactctgctctc--tctttgtgtgagttaaaatgtactggttctcaccg 339
Query: 142 gctaactgccttggaagctttagaagaaaccggttttgaataatttcacaccttcccata 201
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 340 gctaactgccttggaagctttagaagaaacctgttttgaataatttcacaccttcccata 399
Query: 202 cctgttagaatacctccttctgtcagcttcatcattttgggccaggataagacacttggg 261
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 400 cctgttagaatagctccttctgtcagcttcatcattttgggccaggataagacatttggg 459
Query: 262 gactgtaaagatgatgtaggggctactagcagtgtctgctcttgaaaggtc 312
||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 460 gactgtagagatgatgtaggggctattagcagtgtctgctcttgaaaggtc 510
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 710
Length adjustment: 9
Effective length of query: 303
Effective length of database: 701
Effective search space: 212403
Effective search space used: 212403
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
