Query= MSMg01no496_g15.b1 MSMg01no496_g15.b1 CHROMAT_FILE:
MSMg01no496_g15.b1 PHD_FILE: MSMg01no496_g15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:44 2005
(352 letters)
>mm_chr6_54517017_54517768
Length = 752
Score = 629 bits (325), Expect = 0.0
Identities = 343/349 (98%)
Strand = Plus / Plus
Query: 1 acacgggtgtgaaatgagcaggaggattctggggggggcatattatttgtgtcagcaacg 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 acacgggtgtgaaatgagcaggaggattctgggggggccatattatttgtgtcagcaacg 260
Query: 61 actagaaccaaacctcacagtggtggtacacacaattagggaggctgacaaggctacata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actagaaccaaacctcacagtggtggtacacacaattagggaggctgacaaggctacata 320
Query: 121 gtaacaccttgtctcaaaaactaaaagattgaatgaaattcagcctataaataccatgga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaacaccttgtctcaaaaactaaaagattgaatgaaattcagcctataaataccatgga 380
Query: 181 attccatccagcatattttaaagatttaaagatgagatcattgtctgtgtactaattcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attccatccagcatattttaaagatttaaagatgagatcattgtctgtgtactaattcaa 440
Query: 241 gacttcctacttataccaaataaaaggctaaagtggggataggttaggtgcagaacagtt 300
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gacttccaacttataccaagtaaaaggctaaagtggggataggttaggtgcagaacagtg 500
Query: 301 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 349
|||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 501 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgtgtgtgtgtgt 549
Score = 89.7 bits (46), Expect = 3e-22
Identities = 46/46 (100%)
Strand = Plus / Plus
Query: 298 gtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 343
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 gtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 112
Score = 87.7 bits (45), Expect = 1e-21
Identities = 48/49 (97%)
Strand = Plus / Plus
Query: 301 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 349
||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 60 tgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 108
Score = 87.7 bits (45), Expect = 1e-21
Identities = 48/49 (97%)
Strand = Plus / Plus
Query: 301 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 349
||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 tgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 110
Score = 87.7 bits (45), Expect = 1e-21
Identities = 48/49 (97%)
Strand = Plus / Plus
Query: 301 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 349
||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 tgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 112
Score = 85.8 bits (44), Expect = 4e-21
Identities = 47/48 (97%)
Strand = Plus / Plus
Query: 302 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 349
|||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 59 gtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 106
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 77
Number of extensions: 36
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 9
Length of query: 352
Length of database: 752
Length adjustment: 9
Effective length of query: 343
Effective length of database: 743
Effective search space: 254849
Effective search space used: 254849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no496_g15.g1 MSMg01no496_g15.g1 CHROMAT_FILE:
MSMg01no496_g15.g1 PHD_FILE: MSMg01no496_g15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:44 2005
(407 letters)
>mm_chr6_54676801_54677607
Length = 807
Score = 758 bits (392), Expect = 0.0
Identities = 404/408 (99%), Gaps = 2/408 (0%)
Strand = Plus / Minus
Query: 1 gagtgag-ctcactaaaggaaggggagtgaggagctctaaagaccattatcagacctctg 59
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 gagtgagcct-actaaaggaaggggagtgaggagctctaaagaccattatcagacctctg 549
Query: 60 cggtcaggtgctggattagacctgacccctgaatgtgaggagccacgagaacagagaaca 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cggtcaggtgctggattagacctgacccctgaatgtgaggagccacgagaacagagaaca 489
Query: 120 gactctggtcccacagagaaaagaagcaaagactccttccgcatgaccctccagctagca 179
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 488 gactctggtcccacagagaaaagaagcaaagactccttctgcatgaccctccagctagca 429
Query: 180 gaggcagaaactgcatcccaatgataatccaggtggtactgatgatagacaaaaaaaaac 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 428 gaggcagaaactgcatcccaatgataatccaggtggtactgatgatagacaaaaaaaacc 369
Query: 240 caagactagtaaccccagccacaggacaagcttggagcttttgcatcgctgtggtgaggc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 caagactagtaaccccagccacaggacaagcttggagcttttgcatcgctgtggtgaggc 309
Query: 300 attctgacgagttagtcctggaaaagagatccactgtgtcttagagtggccattattcaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 attctgacgagttagtcctggaaaagagatccactgtgtcttagagtggccattattcaa 249
Query: 360 gactgagctactctgggacctgacaacaagccaccacaggtcagctgc 407
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gactgagctactctgggacctgacaacaagccaccacaggtcagctgc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 807
Length adjustment: 9
Effective length of query: 398
Effective length of database: 798
Effective search space: 317604
Effective search space used: 317604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
