BAC Information

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BAC

Clone NameMSMg01-496H05
Chromosome6 (Build37)
Map Location 146,353,544 - 146,354,092
singlet/doubletsinglet
Overlap geneItpr2
Upstream geneIfltd1, LOC100042879, Tuba3b, Rassf8, Bhlhb3, Sspn
Downstream gene4933424B01Rik, Fgfr1op2, Tm7sf3, Surb7, EG626175, Stk38l, LOC621842, Arntl2, 1700023A16Rik, Ppfibp1, 1700034J05Rik, 2210417D09Rik, Mrps35, EG545893, Klhdc5, EG665288, LOC100039641, Pthlh
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496H05.T7 (MSMg01no496_h05.b1)MSMg01-496H05.TJ (MSMg01no496_h05.g1)
ACCAG573253AG573254
length748755
length of high quality
(start - end)
269 (53 - 321)549 (85 - 633)
definitionCHROMAT_FILE: MSMg01no496_h05.b1 PHD_FILE: MSMg01no496_h05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:47 2005CHROMAT_FILE: MSMg01no496_h05.g1 PHD_FILE: MSMg01no496_h05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCTTGATACACTTGAGAAAAGTAGAAAAACAGAATTCTA
TAGCAGGTGATGGTAATGCACAGATCCTAGAACATGAGACACAGGAAGAG
CCTGCGTTTAAAGCCAGCCTGGACTGCATGGAGAAAACTTCTCTCAATAG
AAAAGCAAGAAGAAGGGGTGGCGAGAAGGAGGAATAGGAGAGGGAAGGGG
AAGGGGAGGACAGGAGAGAGGCAGGGCAGAAGGAGAAAGCAGGAATGGAG
TGCCCAGTTGTTGCCACCAAGCTTTTTTACTCTCCTCCAAGTCCTTTGGG
CACAAGGTTTCCTCCTGGGTCCCCATTATCCAAAGTGTCTCTCACCACTC
TTGCTCCTGACCTCTCCTACCCTGTTTTGGGCCACAGAGCTACATATCAG
CCCAGGCAACTCTGATCCTTTTGGGCATTTTGGTTACCCATATCTTATTC
TCTGGGCCTCCAAGGCAGTTCATCCCCACCATGGTTTAGTTAGCAAGTGG
GGAAGTGAGACTAACTGTATCAGTGACCTCTGGATTTGATTGAGAGACCC
TGCCTCAGTTAATACAGTAGATGACTGATCAAGGATGATTCCCAACATCA
ACCCATATATCTTTTTGAAGAGTCTCAAAAAAGGGTTCCTAATTCATATT
GGTCAAAAGCCTGCTTGGCAAAGATTTTACTTAACTGAGTCAGTTGAG
NNNNNCCCCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGCCTCTTGAAGACT
GGTTATTGCAAGACGCCCAGGCTTCTGGGAAATAGGCTATGGTAGGCCTA
TGTTCAGTTTCCAAAAGTACATGGAAGTACTATCTAAAAGGGGGGCGGGC
AGTGAAATGGTTCTTGGGTGTTTCCGGAGGGTCTGAACTCTGTTCCCAAA
ACCCATATGGTAGAAGGAGAAAACCAACTCACAAGAGTTGGACTTTACAT
GTCTGATGTGGCATCTGTCCCCCACATCCATGCACATCCATGCACATACA
TACTTGAAAACTAAATGTAATAAGAAGTTATAAAGAGGGCTGGAGGGGTA
GCTCATGATACAGGGTTTACATGTGAGGCTGTAGGTTCAGTCCTCAGTAC
TGGGGGACAAGTTGCTTCTAGGAAGGCACCCATCAAACCTTCCCACTGTG
TGGCTTAATTACAGCTCTGCTCTGCTTCCTGCGTGGACGGTGGCCATGCA
GCTGGCTGTGTGGGTTGAGCAGAGTGGGTGGACACAGAAAATGCAGCTTC
ACGGAGCGGTTAGGAAGCAGGATTCTGTGCTAAGCAGTAGACTCAGGGTG
ACATCCCTTCTCACTAATCAAGCCTTGTTTGGCTGCGCTGCTCGCCTCCT
AATTCCTCAACTCCACTAAAGCTGAGAAGAACACGCCTGCGTTTGAGAGC
TTGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_h05.g1 MSMg01no496_h05.g1 CHROMAT_FILE:
MSMg01no496_h05.g1 PHD_FILE: MSMg01no496_h05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:47 2005
         (549 letters)



>mm_chr6_146353344_146354292
          Length = 949

 Score =  992 bits (513), Expect = 0.0
 Identities = 540/549 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgcctcttgaagactggttattgcaagacgcccaggcttctgggaaataggctatggta 60
           ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 749 ctgcctcttgaaggctggttattgcaagacgccgaggcttctgggaaataggctatggta 690

                                                                       
Query: 61  ggcctatgttcagtttccaaaagtacatggaagtactatctaaaaggggggcgggcagtg 120
           || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 ggtctatgttcagtttccagaagtacatggaagtactatctaaaaggggggcgggcagtg 630

                                                                       
Query: 121 aaatggttcttgggtgtttccggagggtctgaactctgttcccaaaacccatatggtaga 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 629 aaatggttcttgggtgtttccggagggtctgaactctgttccccaaacccatatggtaga 570

                                                                       
Query: 181 aggagaaaaccaactcacaagagttggactttacatgtctgatgtggcatctgtccccca 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 569 aggagaaaaccaactcacaagagttggactttacatgtctgttgtggcatctgtccccca 510

                                                                       
Query: 241 catccatgcacatccatgcacatacatacttgaaaactaaatgtaataagaagttataaa 300
           ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 509 catccatgcacatccatgcacatacatacatgaaaactaaatgtaataggaagttataaa 450

                                                                       
Query: 301 gagggctggaggggtagctcatgatacagggtttacatgtgaggctgtaggttcagtcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gagggctggaggggtagctcatgatacagggtttacatgtgaggctgtaggttcagtcct 390

                                                                       
Query: 361 cagtactgggggacaagttgcttctaggaaggcacccatcaaaccttcccactgtgtggc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 cagtactgggggacaagttgcttctaggaaggcacccatcaaaccttcccactgtgtggc 330

                                                                       
Query: 421 ttaattacagctctgctctgcttcctgcgtggacggtggccatgcagctggctgtgtggg 480
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 329 ttaattacagctctgctctgcttcctgcatggacggtggccatgcagctggctgtgtggg 270

                                                                       
Query: 481 ttgagcagagtgggtggacacagaaaatgcagcttcacggagcggttaggaagcaggatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ttgagcagagtgggtggacacagaaaatgcagcttcacggagcggttaggaagcaggatt 210

                    
Query: 541 ctgtgctaa 549
           |||||||||
Sbjct: 209 ctgtgctaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space:   506121
Effective search space used:   506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)