Query= MSMg01no496_k20.b1 MSMg01no496_k20.b1 CHROMAT_FILE:
MSMg01no496_k20.b1 PHD_FILE: MSMg01no496_k20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:05 2005
(650 letters)
>mm_chr6_37401585_37402634
Length = 1050
Score = 1118 bits (578), Expect = 0.0
Identities = 627/644 (97%), Gaps = 3/644 (0%)
Strand = Plus / Plus
Query: 4 ggaattccaagattctcgcctggcaggttcttatagggagagaggaagttcagcctgcaa 63
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattccaagaacct-gcctggcaggttcttatagggagagaggaagttcagcctgcaa 263
Query: 64 tctggccataggctacatgactttcctctgagctttttgggggttacaggtaggaagggt 123
|||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||
Sbjct: 264 tctggccataggctacatgactttcctcggaggtttttaggggttacaggtaggaagggt 323
Query: 124 tgttgattggtggaaacacaggacctaattatcataagataagaagggttgggctgagtg 183
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgttgattggtcgaaacacaggacctaattatcataagataagaagggttgggctgagtg 383
Query: 184 ggacttactggctgaatcatgtggcacttgcaggaagctctgtgcggggtcatcctctag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggacttactggctgaatcatgtggcacttgcaggaagctctgtgcggggtcatcctctag 443
Query: 244 ataaggtcaggtacctgtgtttagaaatatgctccagataagatcgggcagagaagagga 303
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ataagatcaggtacctgtgtttagaaatatgctccagataagatcgggcagagaagagga 503
Query: 304 agtcccgcagagaactggagtcctccacgttgtagtaaactctgagagcttctccagaca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agtcccgcagagaactggagtcctccacgttgtagtaaactctgagagcttctccagaca 563
Query: 364 tgcagactgtgaccttaatagcagagtctcccaacagtcctccattttccttcattctgt 423
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgcagactgtgaccctaatagcagagtctcccaacagtcctccattttccttcattctgt 623
Query: 424 acatggctccgatacctgactcttgccaatagacaggtcatccaggccaaaaaatataaa 483
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 624 acatggctctgatacctgactcttgccaatagacaggtcatccagaccaaaaaatattaa 683
Query: 484 aaaaaaaactaacagacattataaaccaaataaacctaacagatatttatagaaggtttt 543
||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 684 aaaaag--ctaacagacattataaaccaaatcaacctcacagatatttatagaaggtttt 741
Query: 544 atccaaacaaaaaagaatgtaccttctcggcatctcactgaactttctccaacatggacc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 atccaaacaaaaaagaatgtaccttctcggcatctcactgaactttctccaacatggacc 801
Query: 604 acatagtcggactcaaagcaagtctcaataaataaaaggaaatt 647
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 acatagtcggactcaaagcaagtctcaataaataaaaggaaatt 845
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space: 665600
Effective search space used: 665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no496_k20.g1 MSMg01no496_k20.g1 CHROMAT_FILE:
MSMg01no496_k20.g1 PHD_FILE: MSMg01no496_k20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:05 2005
(571 letters)
>mm_chr6_37590516_37591486
Length = 971
Score = 685 bits (354), Expect = 0.0
Identities = 381/390 (97%)
Strand = Plus / Minus
Query: 1 tcagagaaagagagtagggatgagtgctacacctctgaaagggagtggggccctttgtca 60
|||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||
Sbjct: 390 tcagagaaagagagtagggatgagtgctacacctctgagagggagtggagtcctttgtca 331
Query: 61 gttaagaaaagtcatctggccttgtcccctgccatttaagtgaggttatatttgcataga 120
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 330 gttaagaaaagtcatctggccttgtcccctgccatttatgcgaggttatatttgcataga 271
Query: 121 taagggcagaaagctcactatcttgttagatactagattttataatgaccttcctgaggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 taagggcagaaagctcactatcttgttagatactagattttataatgaccttcctgaggc 211
Query: 181 catcttggtggtttaaatatgcttgacccatgggaagtggcactattaggaggtatgtgg 240
|||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 210 catcgtggtggtttaaataggcttgacccatgggaagtggcactattaggaggtgtgtgg 151
Query: 241 ccttactgaagtaggtgtggccttgttggaggaagtgtgtcactttgggggtgggctttg 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 ccttactaaagtaggtgtggccttgttggaggaagtgtgtcactttgggggtgggctttg 91
Query: 301 aggtcctatgcttaaactttgcccagtgcagaagagaccctcctggctgcctacagaaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90 aggtcctatgcttaaactttgcccagtgcagaagagaccctcctggctgcctacagaaga 31
Query: 361 gaatctccttctggctgcctttggatcaag 390
||||||||||||||||||||||||||||||
Sbjct: 30 gaatctccttctggctgcctttggatcaag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space: 539121
Effective search space used: 539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
