BAC Information

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BAC

Clone NameMSMg01-497A04
Chromosome6 (Build37)
Map Location 43,128,070 - 43,128,712
singlet/doubletsinglet
Overlap genenone
Upstream geneTas2r144, Gstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2, BC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453, Olfr38, Olfr452, Olfr451-ps1, Olfr450, Olfr449, Olfr448, Olfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483, Olfr444, EG622841, Igk-V, Olfr443-ps1, GA_x5J8B7W6337-1183223-1183810, Olfr441, Olfr440-ps1, GA_x5J8B7W6337-1221999-1222591, Olfr438, Olfr437, Olfr13
Downstream geneGA_x5J8B7W6337-1270568-1271367, Olfr435, Olfr434, LOC665745, Olfr47, Arhgef5, Nobox, Tpk1, LOC665747, LOC546897, LOC665779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497A04.T7 (MSMg01no497_a04.b1)MSMg01-497A04.TJ (MSMg01no497_a04.g1)
ACCAG573680AG573681
length758758
length of high quality
(start - end)		646 (50 - 695)643 (78 - 720)
definitionCHROMAT_FILE: MSMg01no497_a04.b1 PHD_FILE: MSMg01no497_a04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:32 2005CHROMAT_FILE: MSMg01no497_a04.g1 PHD_FILE: MSMg01no497_a04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAACCGAGTACATAGATTGTTGCTGTAATGAACCTAACCACA
TTAGATTTTGGAGGAATGTAGAAATTTTGGAACTCTGGAAAATAAAAGCA
GTTGGATGATGTAAACAGTGCTTAATGGGCCATCCTCATAGGAAACAGAA
AGACAATAAATAAGAAATGAATAAACAAACAAACATAAATAAATAAGCCC
CTGCTGTGCCCTGGAACAAAGGGAAGGCTGTCTTCAGAGCAAAATTCCAC
CCAGCTAAGCAGGCAACTTGTGAAACAAAAAGAGCTGAGGAATGCTCTGC
TCCTAGAAAGCATCATGATATGGCCAGGAAGTGGAATACAGTGGTTTGAA
TAGCAATGTCCCCCACAGGCTCGAATGTTTGGATATTCTCAGTTGCTGGT
TCTGTTTAGGGAGTTCTAAGATACGATGTGGGAGGCAGAATATGAGTGTT
TAAAATCTCCATGTTACTTATGGTTCACTCACTGTTTTGTGCTTGCAGTT
GTTCAAGATGTGAGCTTTCTGCTTCCTGCTCCCACTGCCCTACCTGTCAC
CATCATATGGACACATAAATTTCTTAGTTACTTTTCTATTGCTGTGAAAA
CACGCCATGACGAAGGCAACTAATAAAAGTTTATTGGGAGCTTAGTTTCA
GAGTGTGAGTCCATGACCATCATAGTGCAGAGAACGTCAACAGCAGGCAA
ACATGGCA

CCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAACAGAAGCAAGAGGGGTATAGT
ATCACCAGTGGCTGCTTCTCCCTTGGGGTAGTCAGGCTAGTTGCCGCACC
GGGCTGGAGTTGAGGGAGGGAAGCTTAGCCAAGCATAGATAGATGCAGGC
AGGTCTTAGTGGTGAATGTGAGGTGAAAACACACACTCAGGGCTTCAGAG
AACTGGTTCAGTTTATAGGGGCTAACAAAGGCAAACTTTGGGTGTGGGTA
TACATCATTGGCAGAGGCCAGGGTGCTGTGGATGCCTCATTTCTACGAGA
AGGATTTGCAGGTGCAACTGGACAGACCTTATAAAGGGAAAGGACACTTA
ACCTGGCTACCAGCTCCTCTGGTGAGGTAAAGGTGGGAGGCACAGGGCTA
TGTGCATGGGGGCATGCAGGCACAGGGCAGAGGGGAGAGCAATCCTACTC
CTGCCCATCTCAGGATGAGATTTATGGGTTATGGACATGCCTGGACCCCA
CTCTTACTCCAGGCATGGTCCTCTCAGTACCTTGGCTCCCTGGGCCTGCA
GCTAGGAGAGAATGGGAGGAGATAATAATCAGAATGCATTAGATACACAT
ATAATGTTGTCAAAAAGCAATCTTAACTAATAAAACAATCAAACCTCTAA
GTTTAATGAACTATCAGTCTCTTCTCTACAGTATTAGGTATGGGTAAAGC
AGAATTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_a04.g1 MSMg01no497_a04.g1 CHROMAT_FILE:
MSMg01no497_a04.g1 PHD_FILE: MSMg01no497_a04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:32 2005
         (643 letters)



>mm_chr6_43127870_43128912
          Length = 1043

 Score = 1220 bits (631), Expect = 0.0
 Identities = 640/643 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacagaagcaagaggggtatagtatcaccagtggctgcttctcccttggggtagtcaggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 aacagaagcaagaggggtatagtatcaccagtggctgcttctcccttggggtagtcaggc 784

                                                                       
Query: 61  tagttgccgcaccgggctggagttgagggagggaagcttagccaagcatagatagatgca 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 tagttgcctcaccgggctggagttgagggagggaagcttagccaagcatagatagatgca 724

                                                                       
Query: 121 ggcaggtcttagtggtgaatgtgaggtgaaaacacacactcagggcttcagagaactggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 ggcaggtcttagtggtgaatgtgaggtgaaaacacacactcagggcttcagagaactggt 664

                                                                       
Query: 181 tcagtttataggggctaacaaaggcaaactttgggtgtgggtatacatcattggcagagg 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 663 tcagtttataggggctaacaaaggcaaactttgggggtgggtatacatcattggcagagg 604

                                                                       
Query: 241 ccagggtgctgtggatgcctcatttctacgagaaggatttgcaggtgcaactggacagac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 ccagggtgctgtggatgcctcatttctacgagaaggatttgcaggtgcaactggacagac 544

                                                                       
Query: 301 cttataaagggaaaggacacttaacctggctaccagctcctctggtgaggtaaaggtggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 cttataaagggaaaggacacttaacctggctaccagctcctctggtgaggtaaaggtggg 484

                                                                       
Query: 361 aggcacagggctatgtgcatgggggcatgcaggcacagggcagaggggagagcaatccta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 aggcacagggctatgtgcatgggggcatgcaggcacagggcagaggggagagcaatccta 424

                                                                       
Query: 421 ctcctgcccatctcaggatgagatttatgggttatggacatgcctggaccccactcttac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ctcctgcccatctcaggatgagatttatgggttatggacatgcctggaccccactcttac 364

                                                                       
Query: 481 tccaggcatggtcctctcagtaccttggctccctgggcctgcagctaggagagaatggga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tccaggcatggtcctctcagtaccttggctccctgggcctgcagctaggagagaatggga 304

                                                                       
Query: 541 ggagataataatcagaatgcattagatacacatataatgttgtcaaaaagcaatcttaac 600
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 303 ggagataataatcagaatgcattagatacacatataatgttgtcaaaaagcaatctcaac 244

                                                      
Query: 601 taataaaacaatcaaacctctaagtttaatgaactatcagtct 643
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 taataaaacaatcaaacctctaagtttaatgaactatcagtct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space:   653889
Effective search space used:   653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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