CTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAATACTTACCAAACTTTTTCACTATTTGCTTCTGTGTAGTATAC
ATGTGTTTACATGTTCCTGTATATGTGCAGTTGTTTGTGTGTGGCGGCCA
GGGTAGATGTGTTTGGGGATTTCTCCAATTGTTTTCCACATTAAGTTTTG
AGAAAGCATCTCTCAAAGAACCTAGAGTGCACCAATTTGGCTAATTAACC
TGGACGGAGCCTTTTGCTTCTACCTTCCCAGAATTGGGATTTAGGTTTGT
GCCCTTGTGCCCAGATTTTTATATGGCTGCTGCGGAGCAAACTCTTGCTT
TCATAGATTTGTTCACTAAGACTTCCCAGTCAGCCCTCACCATCTGTCTT
TTATCAAGCATTTCTTCAAAAATGAACTTCTGGAATTTCATTGGACTATT
TTTGTGCTATTTAGATGTAACCTTATGTCAACAAAATTGTAAAGAATTGA
AATGTGTTGAAAAAAGACACATTGAAGATGTTTTTTGTTAGAAGTGAATT
TGTCTTAAGCAAAGATGGCTCCATCTAAAAACTAGACTGAAAAGATGGAT
CTATGACAGGAAATCTCTCCTTTGCTTATCAAGACCATGCCTTTTAGTCA
ATATTTATAGCTACTTTGGCAAGAGCCCATTGCTACTTTTGAACTGACAT
AGTAGACCTCAATTGTTGGACAGGTTTTTGTGCCAGTCAAGTCACCTTTC
AGGCA

NGGCATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTTTCATTAAACTCTAAAAAGT
CTTTAATTTCTTTCTATATTTGTTTCCTTTATCATTGAGGAGAGTGTTTT
TCAGTTTCCACGTGAATGTTGGCTTTCTATTATTTATGTTGTTATTGAAG
ATCAGCCTTAGCCAATGGTGATCTGATAGGATGCATGGGAGAATTTCAAC
ATTTTTGTAACTGTTGAGGCCTGTTTTGTGACCAATTATATGGTCAAATT
TGGAGAAGGTACCATGAGGTGCTGAGAAGAAGGTATTTCCTTTTGTTTTA
AGATAAAATATTTTGTAGATATCTGTTAAATCCATTTGTTTCATAACTTC
TGTTAGTTTCACTGTGTCCCTGTTTAGTTTCTGTTTCGATGAACTGTCAA
TTGATGAGAGCGGGGTGTTGAAGTCTCCCACTATTATTTTGTGAGGTTCA
ATGTGTGCTTTGAGCTTTACTAAAGTCTCTTTAATGAATGTGGCTGCCCT
TGAATTTGGAGCATAGATATTCAAAATTGAGAGTTGCTCTTGGAAGATTT
TATCTTTGATGAATATGAAGTGCCCCTCCTTGTCTTTTTTGATAACTTTG
GGTTGGAAGTCGATTTTATTCTATATTAGAATGGCTCCTCCAGCTTGTTT
CTTCAGGCCATTTGCTTGGAAAATTGTTTTCCAGCCTTTCACTCTGAGGN

Query= MSMg01no497_d02.b1 MSMg01no497_d02.b1 CHROMAT_FILE:
MSMg01no497_d02.b1 PHD_FILE: MSMg01no497_d02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:47 2005
         (689 letters)



>mm_chr6_3664809_3665899
          Length = 1091

 Score = 1266 bits (655), Expect = 0.0
 Identities = 679/687 (98%), Gaps = 2/687 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaatacttac-caaactttttcactatttgcttctgtgtagtatacatgtgttt 63
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaatactgacacaaactttttcactatttgcttctgtgtagtatacatgtgttt 264

                                                                       
Query: 64  acatgttcctgtatatgtgcagttgtttgtgtgtggcggccagggtagatgtgtttgggg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acatgttcctgtatatgtgcagttgtttgtgtgtggcggccagggtagatgtgtttgggg 324

                                                                       
Query: 124 atttctccaattgttttccacattaagttttgagaaagcatctctcaaagaacctagagt 183
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atttctccaattgttttccacgttaagttttgagaaagcatctctcaaagaacctagagt 384

                                                                       
Query: 184 gcaccaatttggctaattaacctggacggagccttttgcttctaccttcccagaattggg 243
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 385 gcaccaatttggctaattaacctggacggagcctcttgcttctaccttcccagaattggg 444

                                                                       
Query: 244 atttaggtttgtgcccttgtgcccagatttttatatggctgctgcggagcaaactcttgc 303
           ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 445 atttaggtttgtgcccttgtgcccagatttttatatggctgctgcagagcaagctcttgc 504

                                                                       
Query: 304 tttcatagatttgttcactaagacttcccagtcagccctcaccatctgtcttttatcaag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tttcatagatttgttcactaagacttcccagtcagccctcaccatctgtcttttatcaag 564

                                                                       
Query: 364 catttcttcaaaaatgaacttctggaatttcattggactatttttgtgctatttagatgt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 catttcttcaaaaatgaacttctggaatttcattggactatttttgtgctatttagatgt 624

                                                                       
Query: 424 aaccttatgtcaacaaaattgtaaagaattgaaatgtgttgaaaaaagacacattgaaga 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaccttatgtcaacaaaattgtaaagaattgaaatgtgttgaaaaaagacacattgaaga 684

                                                                       
Query: 484 tgtttttt-gttagaagtgaatttgtcttaagcaaagatggctccatctaaaaactagac 542
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgtttttttgttagaagtgaatttgtcttaagcaaagatggctccatctaaaaactagac 744

                                                                       
Query: 543 tgaaaagatggatctatgacaggaaatctctcctttgcttatcaagaccatgccttttag 602
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgaaaagatggatctatgactggaaatctctcctttgcttatcaagaccatgccttttag 804

                                                                       
Query: 603 tcaatatttatagctactttggcaagagcccattgctacttttgaactgacatagtagac 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tcaatatttatagctactttggcaagagcccattgctacttttgaactgacatagtagac 864

                                      
Query: 663 ctcaattgttggacaggtttttgtgcc 689
           |||||||||||||||||||||||||||
Sbjct: 865 ctcaattgttggacaggtttttgtgcc 891


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1091
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1081
Effective search space:   733999
Effective search space used:   733999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)