BAC Information

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BAC

Clone NameMSMg01-498J07
Chromosome6 (Build37)
Map Location 89,845,492 - 89,846,071
singlet/doubletsinglet
Overlap genenone
Upstream geneMcm2, Gpr175, 4933427D06Rik, Gm1965, LOC100043153, LOC100043159, EG624483, EG624491, LOC665547, EG624537, Gm839, 4930512J16Rik, Plxna1, Chchd6, Txnrd3, V1r-ps1, V1rb7, V1rb9, V1r-ps2, V1r-ps3, V1ra6, V1ra5, V1rb4
Downstream geneV1r-ps4, V1ra2, V1rb8, V1ra4, V1ra3, V1rb2, V1rb1, V1ra1, LOC625050, V1ra7, V1ra8, V1rb3, LOC100043191, V1r-ps5, V1ra9, BC048671, Chst13, Uroc1, Zxdc, Ccdc37, Klf15, Aldh1l1, Slc41a3, Iqsec1, LOC100043646
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-498J07.T7 (MSMg01no498_j07.b1)MSMg01-498J07.TJ (MSMg01no498_j07.g1)
ACCAG574871AG574872
length1,486752
length of high quality
(start - end)
---581 (64 - 644)
definitionCHROMAT_FILE: MSMg01no498_j07.b1 PHD_FILE: MSMg01no498_j07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:41 2005CHROMAT_FILE: MSMg01no498_j07.g1 PHD_FILE: MSMg01no498_j07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTACACCTATTTTTAATAACCACAAAAATACTTTATCATTTGTGAGGTTG
CAATCTCTTCCTATAAAAGTTGCCTCCCGATCTACCCCGGCTCTCACTCT
CCTCTCCTTCCTAATAAGGTATAAGACCCACCGTAACACGATTGCACACT
CCATATCCGGTTCAATTTGTCAACCGGTATATTATATTTAATATGCAACA
TATACCACCACTATTTACTCGCTACTTGTCTCAATCACGTACCTGTAGCT
GTACGCTGCGTGGTTCAGACCCGGTGCTCCTGAAGAGCGCGGCGAATAGG
ACGTAACCACACGTAAACTATACTAACCGTTTCCGCTATGTGAGCCGCGA
GCAAGACCGCATATTCTGAAAGCGGCGTTATATAAACACACCGCAGAAAT
CCGCATGTAAGACTAGCTCCGGCCCATATCTTTATATAATAAATATTGCA
CGATTATTGACAAGATGAAGAGACGTCAATATGATGACACACGATCAACG
CTGTGCGCCGCTAAAGTGTTCGCGCGAATCTATGGAGAAATCTTTCGATA
GTGTGTATTCTCGCAGATACGAGGCAATCAACGACAAGTATGATATATAA
GGAGCAGATATGTTACGGGCAAGCGACACGAACTATATTCGAAGAAAAAT
CAATAAGACAGGACGCCCGCAATCAGTAGAGTTCTGACTATTGTGGTTAT
GTAGACAGCTACTGCTGGTCAGCACATCTCTTATATAAACACATATGTAA
ACAGACTTACAGTATAATAGCAGCAGAGCATATGTCATGTGTATCATATT
CTGACATAATAGAGACCGTTGTGGCCCACACGACACTATTACACACCGCG
CACCGTTTTTATATATATATAAACACTGATATACGTATCGCAGCATAACA
CAGAGCTAGGCNTTCAATATGTGACAGTTACTCATAGCCGCTACGTGCTA
TACACGACATAAGCGCTATATATTCGGTCGTAGACAGAACGTATAATTAA
GATGAGATACATAGCGCGGCGCTGTATATTATATATGCGTGACAGAATTA
GTGTCGTACTACACCGAATACTTGATTATGTATATTATAAGTGCAGTGAC
TAATATATTCGTCACGTAAGAACCGATATAGCATGACTGATCGACGCAGA
GAGCGCGCGGGGTTATTATACCGGGACCATATACTAGCGAGGTGCGTATG
CAATACTTATCAACGATAAACGATATGTTCGTACAACAATATTTAATATG
TCCTCTCAACGCGATTTTATCGTAGAACGCACATGTATAACTAGCTCACT
CGCGTCTGATGTAGNCTTCGCGACCAGATTATAATAGTGTCAAACCGAGC
GCACGTGTATATCGAAGANACGCTGCGAATCTATATATATCAGCCCTACT
GCACGCTACTGTAATACGCATGAAGATATGACGCTATATCATATTTAGAC
AATAGTCTGAACCTCGCGCGAACGCACTAATACAAN
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXTATTCCCGAAATTCAGTGATGGCATGTATACTCTAAAGAAATAACTGG
AAACTGATTGGAGGAGAGAGATAGACTGGAGAGTATCTGTTGTGTGTTTT
GTCTTCTCTATGAAGAAAGCCTCAAGCAGGTTGCATGTCAACAACTTGGT
CCTCATTGAGGACAATGGCAACCTCATAGGGATGCAAATTAAAATTCCTA
TCCTGACCAGCCTTTGCAGAAGGGAAGGAGAATATTCCAAGGTGCTGGTC
ATTGCTCAGAACTTTGTATGATTAGAGCTGCTCTGAGCTGAGCAGCCATT
TCCTCCACAATGGTGACAGTGTCATGGAACAGAATAAATGTTTTAATGTA
ACCCCCCCCCCCAAAAAAAGACAATTGGAATGGTATTTAACTAGGAAACC
TGAGAGAACACTTAAAATATCAAGAATGAAGGATGAAGAAGAAACCATAA
AACTGCAAGTTGTATAAAACACATGAGCAGTGCTGGGCCTGGTGACTCAG
GTCATTAACTCTGATGTTGAAACAGCAGAATAACTAGTTCAAGGTCAGCA
TGAGCTACAGAACTGAGTCTACATTACTACACAACAGCCACAAACCAAAC
ATAAAAATAAGAATAAGAATGTTTTTAAAATTTCCAGATAGAGTTTGATG
TTGGTGGCACATGTATTTATCCTAGCTTTCAAGAGCTAGAGGCAGGGGAA
AC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no498_j07.g1 MSMg01no498_j07.g1 CHROMAT_FILE:
MSMg01no498_j07.g1 PHD_FILE: MSMg01no498_j07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:41 2005
         (581 letters)



>mm_chr6_89845292_89846271
          Length = 980

 Score = 1069 bits (553), Expect = 0.0
 Identities = 574/583 (98%), Gaps = 5/583 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcagtgatggcatgtatactctaaagaaataactggaaactgattggaggagagagata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcagtgatggcatgtatactctaaagaaataactggaaactgattggaggagagagata 260

                                                                       
Query: 61  gactggagagtatctgttgtgtgttttgtcttctctatgaagaaagcctcaagcaggttg 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 gactggagagtatctgttgtgtgttttgtcttctctatgaaggaagcctcaagcaggttg 320

                                                                       
Query: 121 catgtcaacaacttggtcctcattgaggacaatggcaacctcatagggatgcaaattaaa 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 catgtcaacaacttggtcctcattgaggacaatgacaacctcatagggatgcaaattaaa 380

                                                                       
Query: 181 attcctatcctgaccagcctttgcagaagggaaggagaatattccaaggtgctggtcatt 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atacctatcctgaccagcctttgcagaagggaaggagaatattccaaggtgctggtcatt 440

                                                                       
Query: 241 gctcagaactttgtatgattagagctgctctgagctgagcagccatttcctccacaatgg 300
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctcagaactttgtatgagtagagctgctctgagctgagcagccatttcctccacaatgg 500

                                                                       
Query: 301 tgacagtgtcatggaacagaataaatgttttaatgtaacccccccccccaaaaaaa--ga 358
           ||||||||||||||||||||||||||||||||||||||||||||||   |||||||  ||
Sbjct: 501 tgacagtgtcatggaacagaataaatgttttaatgtaacccccccc---aaaaaaaaaga 557

                                                                       
Query: 359 caattggaatggtatttaactaggaaacctgagagaacacttaaaatatcaagaatgaag 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 caattggaatggtatttaactaggaaacctgagagaacacttaaaatatcaagaatgaag 617

                                                                       
Query: 419 gatgaagaagaaaccataaaactgcaagttgtataaaacacatgagcagtgctgggcctg 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gatgaagaagaaaccataaaactgcaagttgtataaaacacatgagcagtgctgggcctg 677

                                                                       
Query: 479 gtgactcaggtcattaactctgatgttgaaacagcagaataactagttcaaggtcagcat 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gtgactcaggtcattaactctgatgttgaaacagcagaataactagttcaaggtcagcat 737

                                                      
Query: 539 gagctacagaactgagtctacattactacacaacagccacaaa 581
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 gagctacagaactgagtctacattactacacaacagccacaaa 780


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 980
Length adjustment: 10
Effective length of query: 571
Effective length of database: 970
Effective search space:   553870
Effective search space used:   553870
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)