BAC Information

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BAC

Clone NameMSMg01-498L04
Chromosome6 (Build37)
Map Location 129,003,957 - 129,004,662
singlet/doubletsinglet
Overlap geneKlrb1f
Upstream geneTspan9, LOC100043853, LOC667560, Tead4, LOC652986, Tulp3, 5930416I19Rik, Foxm1, Nrip2, Itfg2, Fkbp4, EG667598, Pzp, LOC384494, EG667610, BC048546, Klrb1a, EG545878, LOC677440, Clec2h, LOC100043863, LOC100043861, Klrb1c, LOC100043862, Klrb1d, LOC667706, Clec2i, Clec2g, LOC667715, BC064078, Clec2f
Downstream geneClec2e, Klrb1-ps1, Clec2d, Cd69, 4922502D21Rik, Clec12a, 4933425B16Rik, Clec1b, Clec9a, Clec1a, Clec7a, Olr1, D630042F21Rik, Gabarapl1, Klre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1, Klri2, Gm156, Klra17, Klra5, LOC667764, Klra6, LOC100038893, LOC100038894, LOC100038895, Klra4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-498L04.T7 (MSMg01no498_l04.b1)MSMg01-498L04.TJ (MSMg01no498_l04.g1)
ACCAG574959AG574960
length758745
length of high quality
(start - end)
705 (54 - 758)663 (80 - 742)
definitionCHROMAT_FILE: MSMg01no498_l04.b1 PHD_FILE: MSMg01no498_l04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:51 2005CHROMAT_FILE: MSMg01no498_l04.g1 PHD_FILE: MSMg01no498_l04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAAGGCCCATACCTAAACATAGTAAAATCAATACACAG
CAAACCAGTAGCCAACATCAAACTAAATGGAGAGAAACTTGAACCAATCC
CACTAAATTTGTGGACTAGACAAGGCTGCCCACTCTCTCCCTATCTATTC
AATATAGTACTTGATGGTCTAGCTAGAGCAACTAGTCAACAAAAGGATGT
CAAAAAGATACAAATTGGAAAGGAAGAAGTCAAAATATTGCTGTTTGCAA
ATGATATGATCCTATACTTAAGTGACCCCAAAAATTCCACCAGAGAACTC
CTAAACCTGATAAACAACTTCACCAAATGCCTGGATATAAAATTATATCA
AACAAATCAATAGCCTTCTTCTACTCAAAGGATAAACAGGCTGAGAAAGA
AATTAGGGAAACAACACCCTTCACAATAGTCACAAATAATATTACATACA
TTGGTGTAACTCTAATTAAGCAAGTGAAAGATCTGTGTGACAAGAACTTC
AAGTCTCTGAAGAAAGAAATCAAAGAACATCTCAGAAGATGAAAAGATCT
CCCATGCTCATGGATTGTCAGGATTAATATAGTAAAAAATGGCCATCTTG
CCAAAAGCAATCTACAGATTCAATGCAATCCCCATCGGAATTCAAAATCA
ATTCTTCATAGAGTTAGAAAGAGCAATTTGCAAATTCATTTGGAATAACA
AAAACCCA
NNNNCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAACCAATTGTCTATGCTGAG
GAACTGGAGGCTTGTATTTTAAAGAGTTCATAATGTTAGAGACTATTTGG
ATTTATGAATTAATAACTTAGATTAATCAATTAAAATACAAATGTATATA
TATCAATGTAGAGAGAATTATTTGTGGGGAGCTAGGAAGACCTTGGGCAG
AACGTGTTTAGAACTAATCGTGGTTTAGAAGGTTAATAGATGAATGTAAG
TCATGAATAAACATGTTGAAGCTCAAGTATTTCACTCTGTTTTTTAATTG
TAGAGATTTGTGCAGAACTTGATAAAGGAAAAAGAACAGTTATTTTTTAT
TGGACTAAAATATGTACAGAAGGAGGAGATCTGGAAGTGGATAGATGGCT
CTATTTTAAATCCTAACCTGTAAGTTTTAAATTAACTAATTTGAAAATTC
AATTCATATCTATTTTACTAAAATTAAGTTTTAGAATTTTAATTTAGTTT
ATAAATTCTTGAAAGGTTCAGCTGAAAAGACAAGTCAACCATTTATTGAA
AAATTTCATGTACAAGTAGACATCAACCCTTTTTAATAGTTTGTGTGTAT
GTGTGTGTATTTATTTACAATGGAATTTTAAAGGATAAATAGTATATTAA
CTTATCCATGTCAGAGATAAAATATTTTTAAATGCCTATCTGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no498_l04.g1 MSMg01no498_l04.g1 CHROMAT_FILE:
MSMg01no498_l04.g1 PHD_FILE: MSMg01no498_l04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:51 2005
         (663 letters)



>mm_chr6_129003801_129004862
          Length = 1062

 Score = 1085 bits (561), Expect = 0.0
 Identities = 649/707 (91%), Gaps = 45/707 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaccaattgtctatgctgaggaactggaggcttgtattttaaagagttcataatgttag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 157 taaccaattgtctatgctgaggaactggaggcttgtattttaaagagttcataatgtgag 216

                                                                       
Query: 61  agactatttggatttatgaattaataacttagattaatcaattaaaatacaaa------- 113
           |||||| ||||||||||||||||||||||| ||| ||||||||||||||||||       
Sbjct: 217 agactaattggatttatgaattaataacttggatgaatcaattaaaatacaaacatatat 276

                                                                       
Query: 114 -------------------------------------tgtatatatatcaatgtagagag 136
                                                | |||||||||||||||||||||
Sbjct: 277 atatatatatatatatatatatatatatatatatatatatatatatatcaatgtagagag 336

                                                                       
Query: 137 aattatttgtggggagctaggaagaccttgggcagaacgtgtttagaactaatcgtggtt 196
           ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 337 aattattggtggggagctaggaagaccttgggcagaatgtgtttagaactaatcgtggtt 396

                                                                       
Query: 197 tagaaggttaatagatgaatgtaagtcatgaataaacatgttgaagctcaagtatttcac 256
           ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 397 tagaaggttaatagatgaatgtaagtcatgaataaacatgttgtagttcaagtatttcac 456

                                                                       
Query: 257 tctgttttttaattgtagagatttgtgcagaacttgataaaggaaaaagaacagttattt 316
           ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 457 tctgttttt-aattgtagagatttgtgcagaacttgataaagggaaaagaacagttattt 515

                                                                       
Query: 317 tttattggactaaaatatgtacagaaggaggagatctggaagtggatagatggctctatt 376
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 516 tttattggactaaaatatgtacagaaggagaagatctggaagtggatagatggctctatt 575

                                                                       
Query: 377 ttaaatcctaacctgtaagttttaaattaactaatttgaaaattcaattcatatctattt 436
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 576 ttaaatcctaacctgtaagttttaaatgaactaatttgaaaattcaattcatatctattt 635

                                                                       
Query: 437 tactaaaattaagttttagaattttaatttagtttataaattcttgaaaggttcagctga 496
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 tactaaaattaagttttagaattttaatttagtttataaattcttgaaaggttcagctga 695

                                                                       
Query: 497 aaagacaagtcaaccatttattgaaaaatttcatgtacaagtagacatcaacccttttta 556
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 696 aaagacaagtcaaccatttattgaaaaatttcatgtacaaatagacatcaacccttttta 755

                                                                       
Query: 557 atagtttgtgtgtatgtgtgtgtatttatttacaatggaattttaaaggataaatagtat 616
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 atagtttgtgtgtatgtgtgtgtatttatttacaatggaattttaaaggataaatagtat 815

                                                          
Query: 617 attaacttatccatgtcagagataaaatatttttaaatgcctatctg 663
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 attaacttatccatgtcagagataaaatatttttaaatgcctatctg 862


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1062
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1052
Effective search space:   686956
Effective search space used:   686956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)