BAC Information

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BAC

Clone NameMSMg01-499A10
Chromosome6 (Build37)
Map Location 68,204,338 - 68,204,573
singlet/doubletsinglet
Overlap geneIgk
Upstream geneLOC667318, Serbp1, Il12rb2, LOC667324, EG667326, LOC672137, EG209589, LOC100042890, Il23r, Tacstd2, Igkv2-137, 4930515G16Rik, Igkv1-136, Igkv1-135, LOC723992, EG628006, Igkv14-134-1, Igkv17-134, EG628027, LOC384401, EG628042, EG243423, EG628056, EG628072, Igkv9-129, Igkv9-128, EG243433, Igkv14-126-1, LOC723993, EG628127, ENSMUSG00000050218, EG243431, EG628144, Igkv1-122, EG667435, EG434025, Igkv9-119, Igkv14-118-2, Igkv14-118-1, EG384405, Igkv11-118, Igkv1-117, EG434026, EG628206, Igkv11-114, Igkv2-113, LOC232047, EG381776
Downstream geneIgkv14-111, Igkv1-110, Igkv2-109, Igkv1-108, Igkv2-107, Igkv11-106, Igkv2-105, LOC384408, Gm1067, Igkv15-103, Igkv15-102, Igkv20-101-2, Igkv15-101-1, Igkv15-101, Igkv14-100, Igkv1-99, Igkv12-98, Igkv15-97, Igkv10-96, Igkv2-95-2, Igkv2-95-1, EG434031, EG667550, Igkv2-93-1, Igkv19-93, Gm1408, ENSMUSG00000056850, Igkv4-90, Igkv13-89-1, Igkv12-89, Igkv1-88, Igkv13-87, Gm459, Igkv13-85, Igkv13-84, Igkv4-83, Igkv13-82, Gm460, Igkv13-80-1, Igkv4-80, Gm194, EG628498, Igkv4-78, EG667621, Igkv13-76, Igkv4-75, Igkv13-74-1, LOC236047, Igkv13-73-1, EG628516, Gm1499, Igkv13-71-1, Igkv4-71
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-499A10.T7 (MSMg01no499_a10.b1)MSMg01-499A10.TJ (MSMg01no499_a10.g1)
ACCAG575208AG575209
length760742
length of high quality
(start - end)
244 (81 - 324)244 (64 - 307)
definitionCHROMAT_FILE: MSMg01no499_a10.b1 PHD_FILE: MSMg01no499_a10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:19 2005CHROMAT_FILE: MSMg01no499_a10.g1 PHD_FILE: MSMg01no499_a10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:19 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
ACTAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCGAGGATCGCGCG
GAATCAGNAAGAAGTCCCCTATTCAGTAACATTCAAATTTACTTCTAGTA
GAGAGGTGAAACTAATTAGGTATTGCAAAGAACGGAGAAGGAATAGCTCA
GGGCTGGTCTGCAGAGTGTTTACTTGGGACAACAGCCAGTCTTACCCAGA
CAAGGGAATACACAATGGCCTAGTGAATAGGTGGGTTTACCATGAAAGAT
TTAGGGAATCCCCCTGAGAAAGGTTTCTTCACTAGGCCCAAAGAAACAGC
ATAATCAGGCTTTTACTAAGAACCTTTGTTGGTGGGCTTAACAATAGACT
AGCATTACACCTGGCTCCCTTCTTGTGGCAGAGGCCTTGTCCCAGCCTTC
TTTTGATGTATACATTCCTTATGTTTTGTATCACTGTAACTCGGTCGGAT
ACATCTTGCCTGGTTTCTTGTTATTCTTCTGTATAAAAAGTTTGATGTCT
TCTCATGTTGACTAATTATTTTCATATTCTACACTACCCTCTTGTGTTGA
TTTTGTACATCATTCGCCTCACCCTTTGTCCACCTGTAACTTATAGTATC
TGTTCTATGTTTTACTGGGGAGCATAAAAGGGGCTGCCACTATGTCTGTT
GAATAATTGTGTTGGTAATGTGCAGGTGGACTGAATTGTTTTGGATTCTC
TATTATTGTTTTAGGTCACTTGGCCAATTTTTACTGTTTACTACTATTTA
ATCCGGGGAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTT
TTCGAATAACTCATCTATGAGTTTAGTTTAGAAAAGTGCTGACTTTCAGA
ACTGTAAGGAAAATATTTTTTCATCAGTTTTGAAGATATTGGAATTTAGT
CACAGAAACATGATGGAAAACATACTTTGACTTCTCTGTGCATTTCTAAA
ATTCTTATTAGTTGATGCCTTTGTGAAAAGAGCTTTATTTAATATGAGAG
AGTTACACACTTGCTCTTGTCTATTAAATCCTGTTTAAGGTGTGAATAAC
CGTGAGGAGTTATACTGGAAAAATTAAATTTAGTAGAGGATATTCTTGTT
TTACAGAATCACAGATGCCTACACATAATAACTCCAGTGTTTCTGGGCCT
GTATTGAAATAGAGCACAGTGCTGGAGGGTACATGAAGCAGAGAAGCTTT
GTTCAAAGAATAAAAGAAATATAGAGTGACCTCTAGTACTATAGGTCAAG
TGGTAAAGACAAAAACAAACAAAACAGAAAAAACAAAAAACAAAAAATAA
ATAAAACAAAACAACAACAAAAAACTTTTCTCCAGAGACACTCTGCAGTT
ACTTTTGTTCCGAACTAGTTGCAGTCTCTCATTTTCTTCCACTTCCTTAT
ATTTCCTAATGGGATATAAATGTACGAAGGATGAGTTTTGAACTAAGACA
CTTGGCGAAACACTATAAGTTCAACTATAAAACTACGTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no499_a10.g1 MSMg01no499_a10.g1 CHROMAT_FILE:
MSMg01no499_a10.g1 PHD_FILE: MSMg01no499_a10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:19 2005
         (244 letters)



>mm_chr6_68204138_68204780
          Length = 643

 Score =  346 bits (179), Expect = e-100
 Identities = 223/239 (93%), Gaps = 5/239 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctatgagtttagtttagaaaagtgctgactttcagaactgtaaggaaaatattttttca 60
           |||||||||||||||||||| ||  |||||||||| || | |||||||||||||||||||
Sbjct: 436 tctatgagtttagtttagaagagaactgactttca-aaatttaaggaaaatattttttca 378

                                                                       
Query: 61  tcagttttgaagatattggaatttagtcacagaaacatg--atggaaaacatactttgac 118
           ||||||||||||||||||||||||||||||||||  |||  |||||||||||||||||||
Sbjct: 377 tcagttttgaagatattggaatttagtcacagaa--atgtaatggaaaacatactttgac 320

                                                                       
Query: 119 ttctctgtgcatttctaaaattcttattagttgatgcctttgtgaaaagagctttattta 178
           ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 319 ttctctgtgcatttctaaaattcatattagttgatgccattgtgaaaagagctttattta 260

                                                                      
Query: 179 atatgagagagttacacacttgctcttgtctattaaatcctgtttaaggtgtgaataac 237
           | |||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||
Sbjct: 259 agatgagagagttacacaattgctcttgtctataaaatcttgtttaaggtgtgaataac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 643
Length adjustment: 9
Effective length of query: 235
Effective length of database: 634
Effective search space:   148990
Effective search space used:   148990
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)