Query= MSMg01no501_d02.b1 MSMg01no501_d02.b1 CHROMAT_FILE:
MSMg01no501_d02.b1 PHD_FILE: MSMg01no501_d02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:59 2005
(649 letters)
>mm_chr6_135930048_135931095
Length = 1048
Score = 1239 bits (641), Expect = 0.0
Identities = 647/649 (99%), Gaps = 1/649 (0%)
Strand = Plus / Plus
Query: 1 acacaagcataagcactttacccactgaaccatatcctcctgctaagcatgggggaggga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acacaagcataagcactttacccactgaaccatatcctcctgctaagcatgggggaggga 260
Query: 61 gaggaagaggagaaggagaaagggaaggccatgtgacagaagtgacaggtgttgctcagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaggaagaggagaaggagaaagggaaggccatgtgacagaagtgacaggtgttgctcagt 320
Query: 121 tctgtgtataataccctgccaaggactgctgagacagactgacttaccaggtcaggagac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgtgtataataccctgccaaggactgctgagacagactgacttaccaggtcaggagac 380
Query: 181 ttctgaagccacactccacctctctgtcctctgcccatgatgtctacccacaatgctcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctgaagccacactccacctctctgtcctctgcccatgatgtctacccacaatgctcat 440
Query: 241 ttacccaagatatgcctttatataacatctgttttacaaagccaaagcctctctcaacca 300
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttacccaagatatgcctttaaa-aacatctgttttacaaagccaaagcctctctcaacca 499
Query: 301 aggctaaacacgatgataaaactcaggcgattgtgaatagacgaaaagctgtgtttctga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aggctaaacacgatgataaaactcaggcgattgtgaatagacgaaaagctgtgtttctga 559
Query: 361 gcatacaacacagcaccacaagccctgggctctaaaatggaagacacattcagaagcaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gcatacaacacagcaccacaagccctgggctctaaaatggaagacacattcagaagcaaa 619
Query: 421 caacagctcacacaggatcactctgtgcagagtccacccttgtggacatcgtcttccccc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 caacagctcacacaggatcactctgtgcagagtccacccttgtggacatcgtcttccccc 679
Query: 481 tgggaaatctactgttgaaaggtgtcaaccagccagccgggcccctccacgcctgtgctc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tgggaaatctactgttgaaaggtgtcaaccagccagccgggcccctccacgcctgtgctc 739
Query: 541 catatcagctgtcaggttcataagtgcatttactcattattgaccctgtgtttatctcta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 catatcagctgtcaggttcataagtgcatttactcattattgaccctgtgtttatctcta 799
Query: 601 cctcaaccacacacattgcatctctccgttggaatatgtaatcctgggg 649
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 cctcaaccacacacattgcatctctccgttggaatatgtaatcctgggg 848
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1048
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1038
Effective search space: 663282
Effective search space used: 663282
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_d02.g1 MSMg01no501_d02.g1 CHROMAT_FILE:
MSMg01no501_d02.g1 PHD_FILE: MSMg01no501_d02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:59 2005
(647 letters)
>mm_chr6_136099884_136100931
Length = 1048
Score = 1180 bits (610), Expect = 0.0
Identities = 613/614 (99%), Gaps = 1/614 (0%)
Strand = Plus / Minus
Query: 35 gcctggaacaaacggatgctgttctcagttctccatcagtagctcttagctggagtccat 94
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1048 gcctggaacaaacggatgctgttctcagttctccatcagtagctcttagctggagtccat 989
Query: 95 ttgacaatatttggagaaatatttttggttgtcacaactgggagagggggagagaattgt 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 988 ttgacaatatttggagaaatatttttggttgtcacaactgggagagggggagagaattgt 929
Query: 155 catctagtgggtagaagctaaagatatattcccctctgcccagggcagtatcctgcagca 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928 catctagtgggtagaagctaaagatatattcccctctgcccagggcagtatcctgcagca 869
Query: 215 aagagctaagcagccccaaagggctacattccagctgagcaagccaaccatcccttctgc 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 aagagctaagcagccccaaagggctacattccagctgagcaagccaaccatcccttctgc 809
Query: 275 tctccatgcgcattgttttctcaaagcatcatctagtcccacttcccattgcttggccct 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 tctccatgcgcattgttttctcaaagcatcatctagtcccacttcccattgcttggccct 749
Query: 335 ccgttctttagacggctcattttctcacatggtttcagttacattgattttgatggttct 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 ccgttctttagacggctcattttctcacatggtttcagttacattgattttgatggttct 689
Query: 395 gaaatctgcatttccagcatgtgattatgtctccagtggtttatagaaaaatctcccctg 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 gaaatctgcatttccagcatgtgattatgtctccagtggtttatagaaaaatctcccctg 629
Query: 455 gcatgttatccttgtattgaaaacagtaaaggagagaaaacccccagctttctcctccct 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 gcatgttatccttgtattgaaaacagtaaaggagagaaaacccccagctttctcctccct 569
Query: 515 tccctgtctcaatggccacgaga-cccccccccccccagcttccgttgttttcaacaggc 573
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 568 tccctgtctcaatggccacgagaccccccccccccccagcttccgttgttttcaacaggc 509
Query: 574 acactgacctggcacccattccctctggctccctctccagcagcccctacttccagtcca 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 acactgacctggcacccattccctctggctccctctccagcagcccctacttccagtcca 449
Query: 634 caccagtctttgcc 647
||||||||||||||
Sbjct: 448 caccagtctttgcc 435
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1048
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1038
Effective search space: 661206
Effective search space used: 661206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
