BAC Information

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BAC

Clone NameMSMg01-501G09
Chromosome6 (Build37)
Map Location 136,819,674 - 136,992,315
singlet/doubletdoublet
Overlap geneMgp, Erp27, Arhgdib, Pde6h
Upstream geneGrin2b, EG668137, LOC545887, E330021D16Rik, EG627022, LOC100043893, Atf7ip, 1100001H23Rik, LOC100043894, Gucy2c, Hist4h4, H2afj, Wbp11, BC049715, C030030A07Rik, Art4
Downstream geneRerg, Ptpro, Eps8, Strap, Dera, 9830102E05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-501G09.T7 (MSMg01no501_g09.b1)MSMg01-501G09.TJ (MSMg01no501_g09.g1)
ACCAG577004AG577005
length723711
length of high quality
(start - end)		688 (36 - 723)603 (59 - 661)
definitionCHROMAT_FILE: MSMg01no501_g09.b1 PHD_FILE: MSMg01no501_g09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:14 2005CHROMAT_FILE: MSMg01no501_g09.g1 PHD_FILE: MSMg01no501_g09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,991,631 - 136,992,315)(136,819,674 - 136,820,276)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTATGC
TTTTCACCCCACACCCAACTTGTCTAGCAGTTCTGTAATAAATTTCAGAT
TATTCCTTTATATACATTAGGGCACAAAAAACTGGAATATTTAAGTTACA
GACATCACTGGTTAACAATATAATTTTTTGATACACACGTTTATTGGAAG
TATAAGGGTGTGACTATAACTCAACAAAAGCAGACCATGACTAGCAGAGT
CATGAAACTAGTCAAGCCAGGAAACTTTCTACCCTCCCCACATCACAGAA
CATCCTGTTAATAAATAATACTGTTGTAATTGTTTCTGTCTTCCTGACAA
AGAGTTGCCGGGGCCCACCCCATTTACACTACAGAAGCCAGTCATAATTT
GAAACTCACTTAGCATGATGGTGACCTTTGTTTCAGAGACATAAGCATAT
TCTGTAAAATGCAAGCTTATAAATGTCTGATCCTCACCCAGGGAAGCCAC
AGGGTCATCCAGAGGCTTCGCCTTCAGAGTGTCTGTAAGTCACTACCTAC
TTGATGAAATAAATGCCTATTTTTTGACCCAAAGTTTCAGAAATTATCTG
AATTTCAGAAATCAGAAAGAAAATGTTTAGTTGACCTCTTTAATAAAGAA
ACAGATGTTACTAATTTTTATTATAAAATTATTAAATTTATTAAATCTTA
TTATATTATTTGGATTATGATTA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXAGGAGAGAATTTTGAATCATTAAAATTTTACTTTAGCTAATT
TTGTTGAGTTGAAGAAGAGACAATCATAAAGCCAGGAAGTGCTAGCATGG
ATACCTTATACCTCATGTGTTGAGCAGCTTTGGGAAAAGATTTGGAAGAG
GGCAAGGTGACTTCAGTGGCTCACTTCAGGTGGACACCTTCAGTAACATG
TGTGCCCCCCATACACACACACACACACACACACACACACACACACACAC
ACACTCTCTTTTTTAAAAGTAAAGCAAATCTTTAAAAATAATGATAAACG
CGCACTGTGCAATTTATACCAAGGGTTGTATCACAGTTTCCTCCGATCGA
GGCCTTGTTTCTAGAGTAAGACTCGGGAGAGGAACAAGCTTCGCCTGTCC
GAGGTAGTTGCCACAGAGGCTCAGGAAGGCTGACGCCAAGACTATGGAGG
CAACAAACAAACATGGAGGGGTGGCTGACCAGCTGTGCTGCTGAGAGGAG
AGTCCCCCACACAGTGAGCTGCCTGCAAGCTCGTTGGGGTGGGCTTTACA
GTGATGAAACTACTTTGGAGTTGTCTCTACTTCTTTAAGTGACCCTCCTC
CCATACTCCTGTGTCTGACCCCAATAGAAACTCAATGGTTCGTAACATTG
ACCTGTCATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no501_g09.b1 MSMg01no501_g09.b1 CHROMAT_FILE:
MSMg01no501_g09.b1 PHD_FILE: MSMg01no501_g09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:14 2005
         (688 letters)



>mm_chr6_136991490_136992577
          Length = 1088

 Score = 1309 bits (677), Expect = 0.0
 Identities = 683/685 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctatgcttttcaccccacacccaacttgtctagcagttctgtaataaatttcag 63
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 ggaattctatgcttgtaaccccacacccaacttgtctagcagttctgtaataaatttcag 767

                                                                       
Query: 64  attattcctttatatacattagggcacaaaaaactggaatatttaagttacagacatcac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 attattcctttatatacattagggcacaaaaaactggaatatttaagttacagacatcac 707

                                                                       
Query: 124 tggttaacaatataattttttgatacacacgtttattggaagtataagggtgtgactata 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 tggttaacaatataattttttgatacacacgtttattggaagtataagggtgtgactata 647

                                                                       
Query: 184 actcaacaaaagcagaccatgactagcagagtcatgaaactagtcaagccaggaaacttt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 actcaacaaaagcagaccatgactagcagagtcatgaaactagtcaagccaggaaacttt 587

                                                                       
Query: 244 ctaccctccccacatcacagaacatcctgttaataaataatactgttgtaattgtttctg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 ctaccctccccacatcacagaacatcctgttaataaataatactgttgtaattgtttctg 527

                                                                       
Query: 304 tcttcctgacaaagagttgccggggcccaccccatttacactacagaagccagtcataat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 tcttcctgacaaagagttgccggggcccaccccatttacactacagaagccagtcataat 467

                                                                       
Query: 364 ttgaaactcacttagcatgatggtgacctttgtttcagagacataagcatattctgtaaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ttgaaactcacttagcatgatggtgacctttgtttcagagacataagcatattctgtaaa 407

                                                                       
Query: 424 atgcaagcttataaatgtctgatcctcacccagggaagccacagggtcatccagaggctt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 atgcaagcttataaatgtctgatcctcacccagggaagccacagggtcatccagaggctt 347

                                                                       
Query: 484 cgccttcagagtgtctgtaagtcactacctacttgatgaaataaatgcctattttttgac 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 cgccttcagagtgtctgtaagtcactacctacttgatgaaataaatgcctattttttgac 287

                                                                       
Query: 544 ccaaagtttcagaaattatctgaatttcagaaatcagaaagaaaatgtttagttgacctc 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ccaaagtttcagaaattatctgaatttcagaaatcagaaagaaaatgtttagttgacctc 227

                                                                       
Query: 604 tttaataaagaaacagatgttactaatttttattataaaattattaaatttattaaatct 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 tttaataaagaaacagatgttactaatttttattataaaattattaaatttattaaatct 167

                                    
Query: 664 tattatattatttggattatgatta 688
           |||||||||||||||||||||||||
Sbjct: 166 tattatattatttggattatgatta 142


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space:   730884
Effective search space used:   730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no501_g09.g1 MSMg01no501_g09.g1 CHROMAT_FILE:
MSMg01no501_g09.g1 PHD_FILE: MSMg01no501_g09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:14 2005
         (603 letters)



>mm_chr6_136819474_136820476
          Length = 1003

 Score = 1127 bits (583), Expect = 0.0
 Identities = 598/603 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggagagaattttgaatcattaaaattttactttagctaattttgttgagttgaagaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggagagaattttgaatcattaaaattttactttagctaattttgttgagttgaagaaga 260

                                                                       
Query: 61  gacaatcataaagccaggaagtgctagcatggataccttatacctcatgtgttgagcagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacaatcataaagccaggaagtgctagcatggataccttatacctcatgtgttgagcagc 320

                                                                       
Query: 121 tttgggaaaagatttggaagagggcaaggtgacttcagtggctcacttcaggtggacacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgggaaaagatttggaagagggcaaggtgacttcagtggctcacttcaggtggacacc 380

                                                                       
Query: 181 ttcagtaacatgtgtgccccccatacacacacacacacacacacacacacacacacacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcagtaacatgtgtgccccccatacacacacacacacacacacacacacacacacacac 440

                                                                       
Query: 241 acacactctcttttttaaaagtaaagcaaatctttaaaaataatgataaacgcgcactgt 300
           |||||| | | |  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acacacacacgtaattaaaagtaaagcaaatctttaaaaataatgataaacgcgcactgt 500

                                                                       
Query: 301 gcaatttataccaagggttgtatcacagtttcctccgatcgaggccttgtttctagagta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcaatttataccaagggttgtatcacagtttcctccgatcgaggccttgtttctagagta 560

                                                                       
Query: 361 agactcgggagaggaacaagcttcgcctgtccgaggtagttgccacagaggctcaggaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agactcgggagaggaacaagcttcgcctgtccgaggtagttgccacagaggctcaggaag 620

                                                                       
Query: 421 gctgacgccaagactatggaggcaacaaacaaacatggaggggtggctgaccagctgtgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctgacgccaagactatggaggcaacaaacaaacatggaggggtggctgaccagctgtgc 680

                                                                       
Query: 481 tgctgagaggagagtcccccacacagtgagctgcctgcaagctcgttggggtgggcttta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgctgagaggagagtcccccacacagtgagctgcctgcaagctcgttggggtgggcttta 740

                                                                       
Query: 541 cagtgatgaaactactttggagttgtctctacttctttaagtgaccctcctcccatactc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cagtgatgaaactactttggagttgtctctacttctttaagtgaccctcctcccatactc 800

              
Query: 601 ctg 603
           |||
Sbjct: 801 ctg 803


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space:   588849
Effective search space used:   588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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