BAC Information

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BAC

Clone NameMSMg01-502I20
Chromosome6 (Build37)
Map Location 128,311,593 - 128,469,417
singlet/doubletdoublet
Overlap gene5930416I19Rik, Foxm1, Nrip2, Itfg2, Fkbp4, EG667598, Pzp
Upstream geneLOC100043848, Parp11, Efcab4b, Prmt8, Tspan11, Tspan9, LOC100043853, LOC667560, Tead4, LOC652986, Tulp3
Downstream geneLOC384494, EG667610, BC048546, Klrb1a, EG545878, LOC677440, Clec2h, LOC100043863, LOC100043861, Klrb1c, LOC100043862, Klrb1d, LOC667706, Clec2i, Clec2g, LOC667715, BC064078, Clec2f, Klrb1f, Clec2e, Klrb1-ps1, Clec2d, Cd69, 4922502D21Rik, Clec12a, 4933425B16Rik, Clec1b, Clec9a, Clec1a, Clec7a, Olr1, D630042F21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502I20.T7 (MSMg01no502_i20.b1)MSMg01-502I20.TJ (MSMg01no502_i20.g1)
ACCAG577879AG577880
length746778
length of high quality
(start - end)
405 (35 - 439)239 (73 - 311)
definitionCHROMAT_FILE: MSMg01no502_i20.b1 PHD_FILE: MSMg01no502_i20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:37 2005CHROMAT_FILE: MSMg01no502_i20.g1 PHD_FILE: MSMg01no502_i20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,311,593 - 128,311,996)(128,469,179 - 128,469,417)
sequence
TTGCGAGAGGATCCGCGGAATTCTCCGGTTCACTTTGCTTTTAGTCAATC
AATCCACAATCCATGAAATAGGAAATAGGGCCACATCCCGTCTCAATTTT
AGCTATATAATCTCTTACCCAAACAAAATCTAAGTAAGGTGTTGGCTCGT
TTCTGCTCAACCTTTGCCTATTTTTATTAATCTTTGAGATAGAGTCTTGT
TATGTAGCCTTGGCTAGCCTGGGGCTGGCAATGTAGACCTGGCTGGCCTG
GAATTCAGAGATCTGCCTGCCTCTGCCTCCTGGGTGCTGGGATTAAAGGC
GTGCACCACCACACTCTGCTCACTCTTCAAACACAGTCTTATTATGTAGC
CCAGACTAGACTAATGTGAGGCCCTTTTGTCTCACACCAGGATTATTGGT
ACGTGCCACATACCTAGCTGCTTACAACTTCTAACCGGCTTCCTTCTAAT
ATTAAATAAGAACAAAATTCAGAAAGGCGAAGAACCTGCCTCCTGTCTCA
TAGCATACCACACTCACTATGTCTTAAGCCTTTGTATTCAGCAGGCCTCC
TCCCGGTCAAAGCAGCTCTCCCTTCTCTATTTACTTCAGGGGTTCCCTCT
CTTCTGTGTAATGGGGAACAGATCTTACACCGCGTTCTCAGCTCCTTAAA
AAAAAAAAAAAAAAAAATAAAAAAAGGAAAGGAAAGGAGAGAAAGAAAGA
ACGGGTTTTCTGTTCTAAGCTAAGATCTCCTTTAATTAAAAAAGTT
ATGCTXXXXXXXXXXXXXXXXXXXXXXXXTTTCACAACATGAGGTGAACT
ATAGAAGTACCTGCAGAAATCAGCCAACAGGTATGTAGTAGCCACTCCCT
AGTTCTTACTCTGGCATGAGCTGCAGTGCTAAGTGCAATGCAATAGGACA
AACACTTGAAGTGTCATCAAGCAAGATGTAGGAGTAGGGAGAAGAAATAT
GAGAATGGTTGGTGGTATTAGGGGCCCAGATGAAGGCAGAGATTATGAAT
CTATAACTGCGCCCATTTGGCAAATTTTGTAATTTTCTTGCCAACAGCCA
TCAACATGCCACTGNTTTATTAGAATAAAGTCGTGTTCAAAGCTGGCTTT
TGTCACAGTAGAATGAGGTTGAAGCTGATGTGGGCTGAATGAGAACTAGC
CTCAAAAAGAACTAGTGGCCCTGGAGAGACGTCTCAGTAGCTAAGAACAC
TTGTTGCTCCAGCTGAGGGTCTAGGTTCAATTCCCAACACACACACACAC
ACAAACACACACACACACGGCAACACACAACCTTCTGTAACTCCAGTCCC
AGGAGTGTTCTAGCCTCTGTAGGGTTTGCATGCACGTGCTACATAGACAC
ACACGCAGGCAAAACACCTACAAACATAAAATAAAATTAAAGAATCTTAA
AGTTGTATGCATGCGTTCTGATTTCAGAGGAAGGATAGGTAAAAAAATGC
AGGGATGGCTATTAGAGCCAGCTCTGTATAGAAACTGCCAGGAAGTTACC
AAAGCTTCTCGGAGCCCATCTCTCAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_i20.b1 MSMg01no502_i20.b1 CHROMAT_FILE:
MSMg01no502_i20.b1 PHD_FILE: MSMg01no502_i20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:37 2005
         (405 letters)



>mm_chr6_128311393_128312197
          Length = 805

 Score =  719 bits (372), Expect = 0.0
 Identities = 396/404 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgcttttagtcaatcaatccacaatccatgaaataggaaatagggccacatcccgtctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 ttgcttttagtcaatcaatccacaatccatgaaataggaaatagggccacatcccatctc 260

                                                                       
Query: 61  aattttagctatataatctcttacccaaacaaaatctaagtaaggtgttggctcgtttct 120
           | |||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||
Sbjct: 261 agttttagctatataatctcttacccaaacaaaatcgaagtcaggttttggctcgtttct 320

                                                                       
Query: 121 gctcaacctttgcctatttttattaatctttgagatagagtcttgttatgtagccttggc 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctcagcctttgcctatttttattaatctttgagatagagtcttgttatgtagccttggc 380

                                                                       
Query: 181 tagcctggggctggcaatgtagacctggctggcctggaattcagagatctgcctgcctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagcctggggctggcaatgtagacctggctggcctggaattcagagatctgcctgcctct 440

                                                                       
Query: 241 gcctcctgggtgctgggattaaaggcgtgcaccaccacactctgctcactcttcaaacac 300
           |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 gcctcctgggtgctggaattaaaggtgtgcaccaccacactctgctcactcttcaaacac 500

                                                                       
Query: 301 agtcttattatgtagcccagactagactaatgtgaggcccttttgtctcacaccaggatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtcttattatgtagcccagactagactaatgtgaggcccttttgtctcacaccaggatt 560

                                                       
Query: 361 attggtacgtgccacatacctagctgcttacaacttctaaccgg 404
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attggtacgtgccacatacctagctgcttacaacttctaaccgg 604


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space:   315216
Effective search space used:   315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no502_i20.g1 MSMg01no502_i20.g1 CHROMAT_FILE:
MSMg01no502_i20.g1 PHD_FILE: MSMg01no502_i20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:37 2005
         (239 letters)



>mm_chr6_128469110_128469748
          Length = 639

 Score =  455 bits (235), Expect = e-132
 Identities = 238/239 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gccaacaggtatgtagtagccactccctagttcttactctggcatgagctgcagtgctaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gccaacaggtatgtagtagccactccctagttcttactctggcatgagctgcagtgctaa 249

                                                                       
Query: 61  gtgcaatgcaataggacaaacacttgaagtgtcatcaagcaagatgtaggagtagggaga 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 248 gtgcaatgcaataggacaaacacttgaaatgtcatcaagcaagatgtaggagtagggaga 189

                                                                       
Query: 121 agaaatatgagaatggttggtggtattaggggcccagatgaaggcagagattatgaatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 agaaatatgagaatggttggtggtattaggggcccagatgaaggcagagattatgaatct 129

                                                                      
Query: 181 ataactgcgcccatttggcaaattttgtaattttcttgccaacagccatcaacatgcca 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ataactgcgcccatttggcaaattttgtaattttcttgccaacagccatcaacatgcca 70


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)