Query= MSMg01no503_n02.b1 MSMg01no503_n02.b1 CHROMAT_FILE:
MSMg01no503_n02.b1 PHD_FILE: MSMg01no503_n02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:12 2005
(609 letters)
>mm_chr6_88152690_88153697
Length = 1008
Score = 1141 bits (590), Expect = 0.0
Identities = 602/606 (99%), Gaps = 1/606 (0%)
Strand = Plus / Minus
Query: 4 ggaattctgactcttgggccagcagcatatcctccttccacccccaccagcctgcaccgc 63
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 ggaattctgactcaggggccagcagcatatcctccttccacccccaccagcctgcaccgc 749
Query: 64 cctcacactgctgggtgggggggagagaaaaaaaaaagaaaaagggccccaaagcgggtg 123
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 748 cctcacactgctgggtgggggggagag-aaaaaaaaagaaaaagggccccaaagcgggtg 690
Query: 124 aacgatttaaactcataaatcacttcgccctgaaaaaatatatttattattcttagcatt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 aacgatttaaactcataaatcacttcgccctgaaaaaatatatttattattcttagcatt 630
Query: 184 ttacacattatttgcagagtggagggtattagaaatttcaaaacagcccagcaagaggca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 ttacacattatttgcagagtggagggtattagaaatttcaaaacagcccagcaagaggca 570
Query: 244 ggactgagtcgaggtggctctgaaaacttgccggtccggaaacagatacacgaagtttcc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ggactgagtcgaggtggctctgaaaacttgccggtccggaaacagatacacgaagtttcc 510
Query: 304 ttatctaccggctgcagatgtccggataggaaactccggcaggagatccgaaaggacatt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ttatctaccggctgcagatgtccggataggaaactccggcaggagatccgaaaggacatt 450
Query: 364 tttttaaaaaatcactcaaatgaaaatacacagtataggtgactccatggaaaaataata 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tttttaaaaaatcactcaaatgaaaatacacagtataggtgactccatggaaaaataata 390
Query: 424 aagggcaggtttttttggtggccgctgtgtgttatttaaataagcggaggagaccgggag 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 aagggcaggtttttttggtggccgctgtgtgttatttaaataagcggaggagaccgggag 330
Query: 484 ctgggaggccagggagggcggccagagcagccatagggaaaagtacttcatggccctatt 543
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ctgggaggcgagggagggcggccagagcagccatagggaaaagtacttcatggccctatt 270
Query: 544 tttaaaaagagcgaataagagaccagagcctgagggtgggctgctagaccatgggctctg 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tttaaaaagagcgaataagagaccagagcctgagggtgggctgctagaccatgggctctg 210
Query: 604 ggaatc 609
||||||
Sbjct: 209 ggaatc 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1008
Length adjustment: 10
Effective length of query: 599
Effective length of database: 998
Effective search space: 597802
Effective search space used: 597802
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no503_n02.g1 MSMg01no503_n02.g1 CHROMAT_FILE:
MSMg01no503_n02.g1 PHD_FILE: MSMg01no503_n02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:13 2005
(623 letters)
>mm_chr6_88011787_88012809
Length = 1023
Score = 1174 bits (607), Expect = 0.0
Identities = 619/623 (99%)
Strand = Plus / Plus
Query: 1 acagagctctgcctgcctctgcctcccaagagctgggattaaaggcgtgcaccaccacgc 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 acagagctctgcctgcctctgcctcccaagagctgggattaaagccgtgcaccaccacgc 260
Query: 61 ccggcctgatatgagcatcttatgatctaataaacaactattgcagaaaatgaagatggt 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggcctgatatgagcatcttatgatctaataaacaactattgcagaaaatgaagatggt 320
Query: 121 gatgatcaccagctgtttcaaaaacccaaaggatggggttaggcagctcctggggctgac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatgatcaccagctgtttcaaaaacccaaaggatggggttaggcagctcctggggctgac 380
Query: 181 tgtgcagaagcccccagggcgagggttgcacacctgctaggatgtatgagcctagagtga 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtgcagaagcccccggggcgagggttgcacacctgctaggatgtatgagcctagagtga 440
Query: 241 agaagctctgagcctctctccacactgcaccccatgctctctaatggtattctccatgca 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 agaagctctgagcctctctccacactacaccccatgctctctaatggtattctccatgca 500
Query: 301 tgctctactataactgatgggcgtcaacaagtgcttccctgggttttgtgaggtttcttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgctctactataactgatgggcgtcaacaagtgcttccctgggttttgtgaggtttcttc 560
Query: 361 ttcaagtttaatggttttagttctttttagggttccggtagatgttataacccattgaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcaagtttaatggttttagttctttttagggttccggtagatgttataacccattgaat 620
Query: 421 tagaacagtatttgagaatcctgttgagaggtctgtatagatttctcagctcttaaatgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagaacagtatttgagaatcctgttgagaggtctgtatagatttctcagctcttaaatgt 680
Query: 481 caccccctgcttcaatcccttgccccatcccactgggctcaacttggtctaccttacacc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caccccctgcttcaatcccttgccccatcccactgggctcaacttggtctaccttacacc 740
Query: 541 ccttctctgatttcactcagttctaggcaccttgccataacatgctgttccccaaacatg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccttctctgatttcactcagttctaggcaccttgccataacatgctgttccccaaacatg 800
Query: 601 ccaagcacattccacatcaggga 623
|||||||||||||||||||||||
Sbjct: 801 ccaagcacattccacatcaggga 823
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
