BAC Information

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BAC

Clone NameMSMg01-504F24
Chromosome6 (Build37)
Map Location 20,470,012 - 20,470,319
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040838
Downstream geneKcnd2, LOC100041343
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-504F24.T7 (MSMg01no504_f24.b1)MSMg01-504F24.TJ (MSMg01no504_f24.g1)
ACCAG579270AG579271
length779762
length of high quality
(start - end)		643 (45 - 687)545 (66 - 610)
definitionCHROMAT_FILE: MSMg01no504_f24.b1 PHD_FILE: MSMg01no504_f24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:58 2005CHROMAT_FILE: MSMg01no504_f24.g1 PHD_FILE: MSMg01no504_f24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCG
GAATCTACAGATTCTGTGCAATCCCCATCAAAATTCCAACTCAATTCTTC
ATAGAGCTAGAAAAGGCAATTTACAAATCCATCTAGAATAACAAAAACTC
AGTAGAGTGAAAACTATTCTCAACAATATAAGAAATTTTGGGGAAATCAC
CATCCTTGACCTCAAGTTGTATTATAGAGCAATTGTGATTAAAAACTGCA
TGGTACTGTAGACAAGCAGGTAGATCAATAGAATAGAATTTAAGACCCAA
AAATGAACCCACACACCTATGGTCACTTGATCTTTGACAAAAGAGCTAAA
ACCATCCAGTGGAAAAAAGACAGCACTTTCAACAAATGGTGCTGGCTCAA
CTGGCAGTTAGCATGTAGAAGAATGCAAATTGATCCATTCTTATCTCCTT
GCACAAAGCTCAAGTCTAAGTGGATCAAGGACCATCACATAAAACCACAG
ACACTAAAACTTATAGAGGAGAAAGTGGGGCAAAGTCTCGGATATATGGG
CACAGGAGGAAAATTCCTGAACAGACCAGCAATGGCTTGTGATATAATAG
CTAGAATCGACAAATGGGACCTCATAAAATTGCAAAGCTTATGTAAGAGA
TGTAAGAGAAAGGACACTGTCAATAAGACAAAAAGCCAACCAACAGATTG
GGACAAGATCTTTACCAATGTCACATCTGATAGAGGGTTAATATCAAATA
TGTATTCAAAGAAATTCAGAAGTTAGTCT

GTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCAATTATTTGGTGGTCCCATTGACAGGGGAAGAGA
CATATGATCTAGGAGAATTTGCAACTTTCCTGTCATTCTTTTCATCTTTG
TAACTGGAGGAATCAATTAATTCAGGCTCAGGAAACATTGAAGAAGAATG
CTTGGGAAGGTTGTATTAGCCAGACTATCAGGAATTCTGTAGCTAGGTTG
TATATACTGTGTATTACAGGGTAGTAACATTTATGAAAGCTCAACAATAT
GAATACTTTAAAAAGACCTGAAAAATTGTAACACCACTTGAATGCTAATC
AATATGGAAGTGGAAAATTGTACTGAGACAATTCTAAACTAAGACATACA
GGCAAAGACTTTTGAGTAATAGTCTTTTCCAGAAATGATTCTATTATGGT
TATAAATTTCAACTGTTTAGCCCTAAAAAGAAGATATATAAGTAGTACTA
AATGGTTTCATCAGTTTGCATTTATTTCTACTCATAAGCAAACACAATAA
CTAGTGAATAAGTTCTTGTATTCAAAAGTTATCTTGAGAGTAGGATGGTT
TTGGGAGATTGGAAGAAAGGATAATTATATTTGATTAAATAAAAAATTAA
AAAGTGATAACATTAAACATGAAAATACAGAGGAAATTTAATACAGTAAC
ATGACTGCTCTGGNTAGGAATCAAATCCAACACCTTTCATGTCTGAGTGA
TCTGGCCCCAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no504_f24.g1 MSMg01no504_f24.g1 CHROMAT_FILE:
MSMg01no504_f24.g1 PHD_FILE: MSMg01no504_f24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:58 2005
         (545 letters)



>mm_chr6_20470012_20470956
          Length = 945

 Score =  596 bits (308), Expect = e-174
 Identities = 308/308 (100%)
 Strand = Plus / Minus

                                                                       
Query: 6   atttggtggtcccattgacaggggaagagacatatgatctaggagaatttgcaactttcc 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 atttggtggtcccattgacaggggaagagacatatgatctaggagaatttgcaactttcc 249

                                                                       
Query: 66  tgtcattcttttcatctttgtaactggaggaatcaattaattcaggctcaggaaacattg 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tgtcattcttttcatctttgtaactggaggaatcaattaattcaggctcaggaaacattg 189

                                                                       
Query: 126 aagaagaatgcttgggaaggttgtattagccagactatcaggaattctgtagctaggttg 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 aagaagaatgcttgggaaggttgtattagccagactatcaggaattctgtagctaggttg 129

                                                                       
Query: 186 tatatactgtgtattacagggtagtaacatttatgaaagctcaacaatatgaatacttta 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 tatatactgtgtattacagggtagtaacatttatgaaagctcaacaatatgaatacttta 69

                                                                       
Query: 246 aaaagacctgaaaaattgtaacaccacttgaatgctaatcaatatggaagtggaaaattg 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  aaaagacctgaaaaattgtaacaccacttgaatgctaatcaatatggaagtggaaaattg 9

                   
Query: 306 tactgaga 313
           ||||||||
Sbjct: 8   tactgaga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space:   500225
Effective search space used:   500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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