BAC Information

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BAC

Clone NameMSMg01-505I04
Chromosome6 (Build37)
Map Location 12,868,237 - 12,868,862
singlet/doubletsinglet
Overlap genenone
Upstream genePhf14, LOC100040844, EG625347, LOC435879, Thsd7a, LOC667735
Downstream geneLOC384350, Tmem106b, Gm467, Gm725, 1700016P04Rik, LOC100040478, Tmem168, B630005N14Rik, Gpr85, 2610001J05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-505I04.T7 (MSMg01no505_i04.b1)MSMg01-505I04.TJ (MSMg01no505_i04.g1)
ACCAG580131AG580132
length756767
length of high quality
(start - end)
626 (75 - 700)229 (330 - 558)
definitionCHROMAT_FILE: MSMg01no505_i04.b1 PHD_FILE: MSMg01no505_i04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:26 2005CHROMAT_FILE: MSMg01no505_i04.g1 PHD_FILE: MSMg01no505_i04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGATGATCCG
CGGAATTCTAAGCCTACCTTGAAGGCAAGTGATTTTACTATGCTACTTGA
AAAGAAATCACCCATTTTGATTAATCTATAGAATTTCGCGATTGTTTTTA
TTATTAAAAGGCTGATTGTTGTAGGGTTAATATTTTTAGTTACCTGTCTT
GTTAGCCCTCCTGAGCTACAGTGAAAGCTTACAGACTCCTTTTCTGCTGA
TGATAAATAGATAAATAGAGCTGGTTCTGTTCACCTTCACAACACACTTC
CAAACTCATAAACTGAGCTGTTATTTCCGAAGAGCTATTTATGTCTTGAC
ATTGTTGGATTAGAGCTGCCTTTGTACTTTGAGTTCCTCCATAGTGAAGT
GAAACATAACTTAGTACATAAATAAACTGCAATCTACCTCTAAGCATATT
CTTCCAACAATTACCCGCATCTCAGTGGATCATAACAGTCAAGCTTCAGT
AATCTCATACTGCCAACCCATCCGACCATGTCTCTCTATGAGGCAAAGCC
TCATCATAGCTTTCACAAATGAGGCAGATGCTGAGCCCTAAGCACTCAAG
CTGTTCCTCTGTATCGTTGTTTTTTCTGTTAGTACACATCCTGCTGACAT
TTGTGGGTGGAAGGCTTTGAACCCCTCCTAGTTCAGAATGCTATTAGATT
TACAAATCATTCTTTGCTAGAATAAACTCTGTCAAATTTAGAGTCCCTTA
AAACAA
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGACTTTTATC
ATGAATGGGTGTTGGATCTTGTCAAATGCTTTCTCAGCATCTAATGAGAT
GATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATACTGGATTATGTTGA
TGGATTTTTGTATATTAAACCATCCCTGCATCCCTGGGATGAAACCTACT
TGGTCAGGTTGGATGATTGTTTTGATGTGTTCTTGGATTCGGTTAGTGAG
AACTTTATTGAGGATATTGTATTTTATATTCATAAGGGAAATTGGTCTGA
AGTTCTCTATCTGTGTTGGGTCTTTTTGTGGTTTATGTATCAGAGTAATT
GTGGCTTCATAGAATGAGTTGTGTAGAGTATCTTCTGTTTCTATTTTGTG
GAATAGTTTGTGAAGAACTGGGTATAGATCTTTGAAGGTCTGATAGAACT
CTTCACTAAACCCATCTGGTCCTGGGCTTTTTTTGGTTGGGAGACTATGA
ATGACAGCTTCTATTTCCTTAGGGGATATAGGACTGTTTAGATCATTAAC
CTGATCTTGATTTAACTTTGGTACCTGGTATCTGTCTAGAAACTTGTCCA
TTCCATCCAGGTTCTCCCGTTTTGTTGAGTATAGCCTTTTGTAGAAAGCA
TTGATGGTGTTTTAAATTTCTTCCCGATTTGTTGTTATGGCTCTCTTTTC
CATTTCGGAGTTTGTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no505_i04.b1 MSMg01no505_i04.b1 CHROMAT_FILE:
MSMg01no505_i04.b1 PHD_FILE: MSMg01no505_i04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:26 2005
         (626 letters)



>mm_chr6_12868037_12869062
          Length = 1026

 Score = 1203 bits (622), Expect = 0.0
 Identities = 625/626 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcaagtgattttactatgctacttgaaaagaaatcacccattttgattaatctatagaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcaagtgattttactatgctacttgaaaagaaatcacccattttgattaatctatagaat 260

                                                                       
Query: 61  ttcgcgattgtttttattattaaaaggctgattgttgtagggttaatatttttagttacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcgcgattgtttttattattaaaaggctgattgttgtagggttaatatttttagttacc 320

                                                                       
Query: 121 tgtcttgttagccctcctgagctacagtgaaagcttacagactccttttctgctgatgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtcttgttagccctcctgagctacagtgaaagcttacagactccttttctgctgatgat 380

                                                                       
Query: 181 aaatagataaatagagctggttctgttcaccttcacaacacacttccaaactcataaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatagataaatagagctggttctgttcaccttcacaacacacttccaaactcataaact 440

                                                                       
Query: 241 gagctgttatttccgaagagctatttatgtcttgacattgttggattagagctgcctttg 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagctgtgatttccgaagagctatttatgtcttgacattgttggattagagctgcctttg 500

                                                                       
Query: 301 tactttgagttcctccatagtgaagtgaaacataacttagtacataaataaactgcaatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tactttgagttcctccatagtgaagtgaaacataacttagtacataaataaactgcaatc 560

                                                                       
Query: 361 tacctctaagcatattcttccaacaattacccgcatctcagtggatcataacagtcaagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tacctctaagcatattcttccaacaattacccgcatctcagtggatcataacagtcaagc 620

                                                                       
Query: 421 ttcagtaatctcatactgccaacccatccgaccatgtctctctatgaggcaaagcctcat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttcagtaatctcatactgccaacccatccgaccatgtctctctatgaggcaaagcctcat 680

                                                                       
Query: 481 catagctttcacaaatgaggcagatgctgagccctaagcactcaagctgttcctctgtat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 catagctttcacaaatgaggcagatgctgagccctaagcactcaagctgttcctctgtat 740

                                                                       
Query: 541 cgttgttttttctgttagtacacatcctgctgacatttgtgggtggaaggctttgaaccc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cgttgttttttctgttagtacacatcctgctgacatttgtgggtggaaggctttgaaccc 800

                                     
Query: 601 ctcctagttcagaatgctattagatt 626
           ||||||||||||||||||||||||||
Sbjct: 801 ctcctagttcagaatgctattagatt 826


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space:   625856
Effective search space used:   625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)