BAC Information

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BAC

Clone NameMSMg01-506I10
Chromosome6 (Build37)
Map Location 148,635,877 - 148,636,375
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039727, LOC100039736, Mlstd1, Ergic2, Tmtc1, 1110033J19Rik, EG622319, LOC100042984
Downstream geneLOC665372, Ipo8, Caprin2, EG665395, Tera, LOC667138, D030011O10Rik, 4833442J19Rik, C730024G19Rik, 2810474O19Rik, LOC665426, LOC622481, LOC665441, Bicd1, LOC667182, LOC100039850
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-506I10.T7 (MSMg01no506_i10.b1)MSMg01-506I10.TJ (MSMg01no506_i10.g1)
ACCAG580900AG580901
length750747
length of high quality
(start - end)
282 (333 - 614)525 (79 - 603)
definitionCHROMAT_FILE: MSMg01no506_i10.b1 PHD_FILE: MSMg01no506_i10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:34:46 2005CHROMAT_FILE: MSMg01no506_i10.g1 PHD_FILE: MSMg01no506_i10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:34:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGAGTTATTCACAGCAACATGGAAAATCCTGTCTTGAAGAG
AAAAAGAAACAGAAAGCAAAAATAAAGAAAAAACTGGTTTGGAAAATAGC
TTGGCACTTTCTTATAAAATTAAATGTATACTTATTGTATGGCCAAACAG
TTGCATTTCTAGAACTCAACAGAAATGAAAACATGTGCTCATTTAAATAC
CTGTATATATTTATACTATCTATTCATAGTGGTTTTCAATTGGAGTCAGT
GTAGATGCATGGCAGTAAATTGATAATTTTTTTTATATTTGTTCAGTCGA
TTTTTAGCAATTAAGAAAAAGAAATGGCTGGGTATGGTGGCTCTTGCCTG
TAATCTCAGCATTTGGAAGGCAGAGGTAAGAAGATCTTTACAAGTTTGAG
GCCAGCCTGATCTACAGTTCTATTTTTTTTTTAAGATTTATTTATTTATT
ATATGTAAGTACACTGTAACTGTCTTCAGACACCCCAGAAAAGGGCATCA
GATTTTGTTATGGATAGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAA
CTCAGGTCCTTCAGAAGAACAGTTGTTGCTCTTAACCCCTGAGCCATCTC
TCCAGCTCCCTACAGCTAGTTCTAATTCAGCTAGAGCTACATAGTGAGAT
CTTATCTCAGAACAAACAAACAAAGTCCAAAACTCCAAAACAAACATTAN

GTTGCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGAGCACACCACCATGACTGG
CTTAAAAATGATGTTGTTCTATGCTGTGTGGCTTTTTTATTTTCTCTACG
TCCTATTCACACCAAGGAATCCAGAAATGAGCACAAATTAAATCGATTTT
TTTCTTTATTTCTTTGAATCCTAACAACAGCTGGTGAACAAGAATTTAAA
AGCCACTAAAATATTTTATCTTTTATAAATAATAAATTATGTGTTTGCTT
GACACTCTCCCTTGGTGATCTAGTTTTTGCTGCCATTGAACACTCAGGAT
GAACAAACAGGTCCCTGAAGTTATTAAACATCATTGTCATCAGAAAGATA
GATGAAGAGCTGTAGTCTTCACTGCAGAAATCTGGTGCCCCAAGGTGCTC
AAAACAGCAAGCACACATGAGCACTTGTGTGTGCCAATGCATTATTCCTG
CTCCAAATTAATATCTTAGCTTTTCCTATCCTGCTTTTTATTCATAGTCT
TTATAATGTAAACCTGCACGGATGAAAGCTAGCCTGGCATTCCTCCCATT
AGCATGAGTGACAAGTTGACCCATAAATTCTACTCTACATTATTGCTTAT
GAAGCCGAGTTAATCTGTGGAAAGAAAAATATCGGTGTTATCTTCTGATG
CAGATGCTCTCTGGCTCTGCAGCCCCCTGCTGGTGATGCACTGAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no506_i10.g1 MSMg01no506_i10.g1 CHROMAT_FILE:
MSMg01no506_i10.g1 PHD_FILE: MSMg01no506_i10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:46 2005
         (525 letters)



>mm_chr6_148635652_148636575
          Length = 924

 Score =  905 bits (468), Expect = 0.0
 Identities = 492/500 (98%), Gaps = 1/500 (0%)
 Strand = Plus / Plus

                                                                       
Query: 26  aaaaatgatgttgttctatgctgtgtggcttttttattttctctacgtcctattcacacc 85
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 226 aaaaatgatgttgttctatgctgtgtggtttttttattttctctacgtcctattcacacc 285

                                                                       
Query: 86  aaggaatccagaaatgagcacaaattaaatcgatttttttctttatttctttgaatccta 145
           |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 286 aaggaatccagatatgagcacaaattaaatcgatttttt-ctttatttctttgaatccta 344

                                                                       
Query: 146 acaacagctggtgaacaagaatttaaaagccactaaaatattttatcttttataaataat 205
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 acaacagctggtaaacaagaatttaaaagccactaaaatattttatcttttataaataat 404

                                                                       
Query: 206 aaattatgtgtttgcttgacactctcccttggtgatctagtttttgctgccattgaacac 265
           |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 405 aaattatgtgtttgcttgacactctcccttggtgatctagtagttgctgccattgaacac 464

                                                                       
Query: 266 tcaggatgaacaaacaggtccctgaagttattaaacatcattgtcatcagaaagatagat 325
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 465 tcaggatgaacaaacaggtccctgaagttattaaacatcattgtcgtcagaaagatagat 524

                                                                       
Query: 326 gaagagctgtagtcttcactgcagaaatctggtgccccaaggtgctcaaaacagcaagca 385
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gaagagctgtagtcttcactgcagaaatctggtgccccaaggtgctcaaaacagcaagca 584

                                                                       
Query: 386 cacatgagcacttgtgtgtgccaatgcattattcctgctccaaattaatatcttagcttt 445
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 cacatgagcacctgtgtgtgccaatgcattattcctgctccaaattaatatcttagcttt 644

                                                                       
Query: 446 tcctatcctgctttttattcatagtctttataatgtaaacctgcacggatgaaagctagc 505
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 tcctatcctgctttttattcatagtctttataatgtaaacctgcacggatgaaagctagc 704

                               
Query: 506 ctggcattcctcccattagc 525
           ||||||||||||||||||||
Sbjct: 705 ctggcattcctcccattagc 724


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 924
Length adjustment: 10
Effective length of query: 515
Effective length of database: 914
Effective search space:   470710
Effective search space used:   470710
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)