Query= MSMg01no506_m17.b1 MSMg01no506_m17.b1 CHROMAT_FILE:
MSMg01no506_m17.b1 PHD_FILE: MSMg01no506_m17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:07 2005
(533 letters)
>mm_chr6_83466238_83467170
Length = 933
Score = 915 bits (473), Expect = 0.0
Identities = 516/534 (96%), Gaps = 8/534 (1%)
Strand = Plus / Plus
Query: 1 taggggaggttacagagtttagtcaacacccatgccttcagaaatcatatcangcacagg 60
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 208 taggggaggttacagagtttagtcaacac-----ccttcagaaatcatatcaggcacagg 262
Query: 61 gctcacccttgtaatgcccagcacatgggaggctgaggcagaagggtcagtaattcaagg 120
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 263 gctcactcttgtaatgcccagcacaagggaggctgaggcagaagggtcagtaattcaagg 322
Query: 121 caagcctgaattgcagagtgagaccctgtccaaaaaaacagacaaaaccaccaccagaag 180
||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 323 caaacctgaattgcagagtgagaccctgtcc--aaaaatagacaaaaccaccaccagaag 380
Query: 181 tatagctccagcccttaggatcctcctccattgcagttgatcatctctcagctggatccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatagctccagcccttaggatcctcctccattgcagttgatcatctctcagctggatccc 440
Query: 241 aagctcagaattatttcctggccatggccctgctcttagttccctcatggctcagctgat 300
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagctcagaagcatttcctggccatggccctgctcttagttccctcatggctcagctgat 500
Query: 301 gtttctcacggtggcccaaggcacacactgaaacattacacttcttgccatagctttaag 360
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 501 gtttctcacggtggcccaaggcacatactgaaacattacacttcttgccatagctttaag 560
Query: 361 gagatcctttaagtccatatgctataaagttaacccctctagagttcagtagttgttagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagatcctttaagtccatatgctataaagttaacccctctagagttcagtagttgttagt 620
Query: 421 atatctacacggttgggcaagcgtcaccacaataccacttt-acagacaagatggccttg 479
|||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 621 atatctacacggttggacaagcgtcaccacaataccatttttacagacaagatggccttg 680
Query: 480 aattcactatgcagctgaggatgaccttaatttcccaatctccccatttccaca 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aattcactatgcagctgaggatgaccttaatttcccaatctccccatttccaca 734
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space: 482729
Effective search space used: 482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no506_m17.g1 MSMg01no506_m17.g1 CHROMAT_FILE:
MSMg01no506_m17.g1 PHD_FILE: MSMg01no506_m17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:07 2005
(677 letters)
>mm_chr6_83621655_83622731
Length = 1077
Score = 803 bits (415), Expect = 0.0
Identities = 556/673 (82%), Gaps = 107/673 (15%)
Strand = Plus / Minus
Query: 105 cctccttcttagcctggcttgctccatggtgaatcctcatgaacacagggctctgctttg 164
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1077 cctccttcttagcctggcttgctccatggtgaatccccatgaacacagggctctgctttg 1018
Query: 165 tccttgtccttgcacagtggcactactggaatggagtggagctaactgtttctgctcatt 224
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1017 tccttgtccttgcacagtggcactactggaatggagtggag----ctgtttctgctcatt 962
Query: 225 ggtacctggggccagtcagttatctccgtgtcttatatggcttgatacccagcctttctg 284
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 961 ggtacctggggccagtcagggacctccgtgtcttatatggcttgatacccagcctttctg 902
Query: 285 cctagctggggtgaggacctgacccaagtccaggcctatgcagtatagactcatgggagc 344
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 cctagctggggtgaggatctgacccaagtccaggcctatgcagtatagactcatgggagc 842
Query: 345 cttgagagatgcaggctaggggcacagcagg----------------------------- 375
|||||||||||||||||||||||||||||||
Sbjct: 841 cttgagagatgcaggctaggggcacagcagggagcttagagttgagagccaccatgtggt 782
Query: 375 ------------------------------------------------------------ 375
Sbjct: 781 tgctgggatttgaacctcggaccttcggaagagcagtcaggtgctcttacccactgagcc 722
Query: 376 --------------gagcttagagttgaaggactatttcaactcttaggtctttttaggt 421
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 atctcaccagtcccgagcttagagttgaaggactatttcaactcttaggtctttttaggt 662
Query: 422 ttgggagcaaaaccttgcagtgttgtcagccaggatgaaaaccggggttaaaataactca 481
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 661 ttgggagcaaaaccttgcagtgttgtcagccaggatgaaaaccggggttaaaataactta 602
Query: 482 tccgaagtttcatttatttatattattgtgtgtgtacgtgatgtatgcgttacgtgtgtg 541
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 601 tccgaagtttcatttatttatattattgtgtgtgtacgtgatatatgcgttacatgtgtg 542
Query: 542 taaaggtcagaggacaacttgtccaggtccgttcttccctaccatgtggattccggagat 601
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 541 taaaggtcagaggacaacttgtccaggtccgttcttccttaccatgtggattccggagat 482
Query: 602 cagcctcaggttatcagctttgcttgcaggtactctgacccactgagccatcttgctggc 661
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 481 cagcctcaggttatcagctttgcttgcaggtactctgacccaccgagccatcttgctggc 422
Query: 662 ctctaaaataacc 674
|||||||||||||
Sbjct: 421 ctctaaaataacc 409
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space: 711689
Effective search space used: 711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
