NCCCCCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCAGGTTGTTAGCTCGGTAGCAAACACCTTCATCTTGC
CACCCCCACTGTTAGAAATTTTAAAGTCCTCAAAATGAGAAACTATTGAA
ACCTTAAATAGAATCCTAGGTTTCTGAGTTCTGGGGTACGGGGAGGAGCA
TATGCAGACTCATGGGAGTTGCTAGTGGCAGAGCCCTGGGGTGGTTGGTA
GGTCAGACAGTGAGGAGTGGCCAGGACATTGGACACAAAGCAGTAAATGA
ACCACTCCACACAACTGCTGAAGTGTGCGTTCATACCAGAAAATAGCCTG
AAGAACAAAGCCTTAAGACTATATTGCTGGCTCTGAATCCTGGCTCCTCC
AGTTTCTAGCCACATATCCTTGGACATCTGCACTGTAGGGCTGGAGTGTC
ATATTAATTTTATTATTATTATTATAAAACAACATAATACTAAGCTAAGT
TGTAATAGCTGCTATTATCAATCACTATTACAGCTTTGACTTTGGAATAG
TTTACAAGTCATAGAACCAAACACAGTGAAGAGGGTTTCTGTTTATCCTT
CTCCCAACTCCCCCCAGCCCCCAATGATGGTGTCTTCAGCATGCTCCATA
TTGACTCTACGATGCCCATAGGGTTCTAAGTGGACATGCCATGTAGGTTG
TTGGATAACAGGCAAGGTTGTTCAGCTATCAACCG

TATTTTCTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCAGTTAATCTGCC
CTATCTCTGTCTTTTCTTTGCCTGGCTATAGGGAGTGGCCACTTCAGGAT
TCATATCTCCCACTGGTAGGAGTCTCAGCTCAGAAACAACCTAGTATCCT
AGATGTCCCTCAACTGAAGAATAAAGAAAACATGGTTCATTTACACAATG
GAATATTACTCAGCCATTAAAAACAAGGACCTCATGAATTTCACAGGCAA
ATGGATGGAACTAGGTAATTTATCCTGAGTAAGGTAACTGTGGTGGTTTG
AATATGCTTGGCTAAGGGAGTGGCACTATTGGAGGTGTGGCCTTGTTAGA
GGAAGTGTGTCACAGTGAGGGTGGGTTTAGCTGCTTGAAGATAGTCCTCT
TCTGAGTGCCTTCAGATTAAGATGTAGAACTCTCAGCTCCTTCTCCAGCA
CCATGTCTTCTTGGACACTGCCATTCTTCCCACCATGATGGCAATGTACT
GAACCTCTGAACTTGTAATCAAGTCTCAATTAAACGTTGTACCTTGTAAG
AGTTGCCTTGGTCATAGTGTCTCTTATTAGCCATGGAAACTAACTAAGAC
AGTAACCCAGAACTCAAATGAGAAGCATGGTGTGTACTCTCTTTTAAGCA
ATTTTATACTTAAAGTACAGGATAACCTTGCCATTA

Query= MSMg01no506_n02.b1 MSMg01no506_n02.b1 CHROMAT_FILE:
MSMg01no506_n02.b1 PHD_FILE: MSMg01no506_n02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:08 2005
         (659 letters)



>mm_chr6_93789990_93791048
          Length = 1059

 Score =  907 bits (469), Expect = 0.0
 Identities = 492/501 (98%), Gaps = 3/501 (0%)
 Strand = Plus / Minus

                                                                        
Query: 162  gagttgctagtggcagagccctggggtggttggtaggtcagacagtgaggagtggccagg 221
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1059 gagttgctagtggcagagcactggggtggttggtaggtcagacagtgaggagtggccagg 1000

                                                                        
Query: 222  acattggacacaaagcagtaaatgaaccactccacacaactgctgaagtgtgcgttcata 281
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 999  acattggacacaaagcagtaaatgaaccactccacacaactgctgaagtgtgcgttcata 940

                                                                        
Query: 282  ccagaaaatagcctgaagaacaaagccttaagactatattgctggctctgaatcctggct 341
            ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 939  ccagaaaatagcctgaagagcaaagccttaagactatattgctggctttgaatcctggct 880

                                                                        
Query: 342  cctccagtttctagccacatatccttggacatctgcactgtagggctggagtgtcatatt 401
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 879  cctccagtttctagccacataaccttggacatctgcactgtagggctggagtgtcatatt 820

                                                                        
Query: 402  aatt---ttattattattattataaaacaacataatactaagctaagttgtaatagctgc 458
            ||||   ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 819  aattttattattattattattataaagcaacataatactaagctaagttgtaatagctgc 760

                                                                        
Query: 459  tattatcaatcactattacagctttgactttggaatagtttacaagtcatagaaccaaac 518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759  tattatcaatcactattacagctttgactttggaatagtttacaagtcatagaaccaaac 700

                                                                        
Query: 519  acagtgaagagggtttctgtttatccttctcccaactccccccagcccccaatgatggtg 578
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699  acagtgaagagggtttctgtttatccttctcccaactccccccagcccccaatgatggtg 640

                                                                        
Query: 579  tcttcagcatgctccatattgactctacgatgcccatagggttctaagtggacatgccat 638
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 639  tcttcagcatgctccatattgactctacgatgctcatagggttctaagtggacatgccat 580

                                 
Query: 639  gtaggttgttggataacaggc 659
            |||||||||||||||||||||
Sbjct: 579  gtaggttgttggataacaggc 559


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space:   680801
Effective search space used:   680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)