NCAACTATAATTTGCGGGCGCTATACGAATCACTAATTCGACACGATGCG
CGGAAATCTATTACATCCAACAATATGTTCATATAGCTCAAGTGTTAACA
AAATATTATTTATTAAATTATATGCTCAAATATTTGTCTATGGCCATTTA
TACCACAGATATTTGTTAGGCATGTGTTGTACATATTATACTCACTCTGT
AAAAACTGAAATAGCAGAATATTGAAGAGATAAATAATCTCTCAATTCCT
CATCTGTAAACTTATGAGTGTTTCTGCTACACTGTGTAGATAGCAGCCTT
ATTTATAATAGCCAGATGCTGGTTATAAAGCAGATGTCCTTCAACAGAGG
AATGGAAACGAAAAATGTGGTACATTTACACAATGAAGTACTACTCAGTT
ATTAAAATCAATGACTTCCTGAAATTCAGAGGTAAATAGATTGGACAAGA
AAATATCATCCTGAGTGAGGTAACTCCATCACAAAAGAACATACATGGTA
TGTACTCACTGATAAGTGGATATTAGAGAAAATGCTTGGAATACCCATGA
TACAACTCACAGACCATATGAAGCTCAAGAAGACAACCAAAGTGTGGATG
CTTCAGTCCTACTTAGAAGGGGGAAACAAAATAATCATGGAAGGCAGAGG
GAGAAAGGGATCTGGGTGGGATAGAGGAGAAGAGGGGAAAGGTGTGGGGT
TTTCTCTCCCTTTCCCCTTCCTTTTTCTTTTCCCTTTCCTTCCCCTCTT

NNNCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACAAACCACATGAACTTCAAGAAG
AGGGAAGACCAAATTGTGGATACTTCGATACTTCTGAGAAGGGGGAACAA
AATACCCATGGAAGGAGTTACAGAGACAAAGTATGGAGCAGAGACTGAAG
GAATGACCATCCAGAGACTGCCCCACCTGGGGATCCATCCCATATACAAC
CACCAAACCCAGACACTATTGTGGATGCCAACAAGCGCTTCCTGATAGGA
GCCTGATATAGCTGTCTCCTGAGTGGCGCTGCCAGTGCCTGACTAATACA
GAGGTGGATGCTCACAGTCATCTATTAGACCAAGAACAGGGTCCCCAATG
AAGGAGCTAGAGTAAGGACCCAAGGAGCTGAAGGGGTTTGAAGCTCCATA
AGAGGAAAAACAGTATGAACTAACCAGTATCCCCAAAGCTCCCAGGGACT
AAATCACTAACCAAGGAGTATACATGTTGGGACTCATGACACCAGCTGCA
TATGTAGCAGAGGATGACCTAGTTAGTCATCGCTGGGAAGAGAGGCCCTT
AGTCCTGTGAAGGCTTCATGACCCAGTGTGGGGGATTTCCAGGACAGGGA
AGCTGGAGTGGGTGGATTAGTGAGCAGGTGGAGGGGGGATGGCATANAGT
GTCTTTGAAGGGGGAATCANGAAAGCAGATAACATTTGAAATGTAAATGA
AGAAAACATCTAATN

Query= MSMg01no506_p12.b1 MSMg01no506_p12.b1 CHROMAT_FILE:
MSMg01no506_p12.b1 PHD_FILE: MSMg01no506_p12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:20 2005
         (608 letters)



>mm_chr6_105119170_105120177
          Length = 1008

 Score = 1145 bits (592), Expect = 0.0
 Identities = 604/608 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcatatagctcaagtgttaacaaaatattatttattaaattatatgctcaaatatttgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcatatagctcaagtgttaacaaaatattatttattaaattatatgctcaaatatttgt 260

                                                                       
Query: 61  ctatggccatttataccacagatatttgttaggcatgtgttgtacatattatactcactc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 261 ctatggccatttataccacagatatttgttaggcatgtgttgtacatattatactcactg 320

                                                                       
Query: 121 tgtaaaaactgaaatagcagaatattgaagagataaataatctctcaattcctcatctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtaaaaactgaaatagcagaatattgaagagataaataatctctcaattcctcatctgt 380

                                                                       
Query: 181 aaacttatgagtgtttctgctacactgtgtagatagcagccttatttataatagccagat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaacttatgagtgtttctgctacactgtgtagatagcagccttatttataatagccagat 440

                                                                       
Query: 241 gctggttataaagcagatgtccttcaacagaggaatggaaacgaaaaatgtggtacattt 300
           |||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctggaaacaaagcagatgtccttcaacagaggaatggaaacgaaaaatgtggtacattt 500

                                                                       
Query: 301 acacaatgaagtactactcagttattaaaatcaatgacttcctgaaattcagaggtaaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acacaatgaagtactactcagttattaaaatcaatgacttcctgaaattcagaggtaaat 560

                                                                       
Query: 361 agattggacaagaaaatatcatcctgagtgaggtaactccatcacaaaagaacatacatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agattggacaagaaaatatcatcctgagtgaggtaactccatcacaaaagaacatacatg 620

                                                                       
Query: 421 gtatgtactcactgataagtggatattagagaaaatgcttggaatacccatgatacaact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtatgtactcactgataagtggatattagagaaaatgcttggaatacccatgatacaact 680

                                                                       
Query: 481 cacagaccatatgaagctcaagaagacaaccaaagtgtggatgcttcagtcctacttaga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cacagaccatatgaagctcaagaagacaaccaaagtgtggatgcttcagtcctacttaga 740

                                                                       
Query: 541 agggggaaacaaaataatcatggaaggcagagggagaaagggatctgggtgggatagagg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agggggaaacaaaataatcatggaaggcagagggagaaagggatctgggtgggatagagg 800

                   
Query: 601 agaagagg 608
           ||||||||
Sbjct: 801 agaagagg 808


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space:   596804
Effective search space used:   596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)