BAC Information

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BAC

Clone NameMSMg01-507D13
Chromosome6 (Build37)
Map Location 5,746,553 - 5,747,080
singlet/doubletsinglet
Overlap geneDync1i1
Upstream geneLOC100040018, Ppp1r9a, Pon1, Pon3, Pon2, Asb4, Pdk4
Downstream geneSlc25a13, EG667462, EG667468, LOC667471, LOC100040096, Shfm1, LOC545826
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-507D13.T7 (MSMg01no507_d13.b1)MSMg01-507D13.TJ (MSMg01no507_d13.g1)
ACCAG581425AG581426
length1,553763
length of high quality
(start - end)
---530 (77 - 606)
definitionCHROMAT_FILE: MSMg01no507_d13.b1 PHD_FILE: MSMg01no507_d13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:41 2005CHROMAT_FILE: MSMg01no507_d13.g1 PHD_FILE: MSMg01no507_d13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGTTTGTTGGATGTGGTGGGCGGAGTGTAGTGTCGATGTGCACGCGGAG
CGATTCTCTTTCCCCTCACAATAACGACGCAAGATTGGTAGATACCGCGA
CTCGTCTCCTACCCACAAACGGCCGGCGGACCTGCGCCGCGTCTCGAGCG
CGCGATATACGCACACACCAGGTAAACANGAGACGAAGTGCTGGCAGCCC
ACCACAATTAGACGCATGCACGGCACGATGAGGACGATAGCACGCGCTAA
TCCGCATAGTGAGTCCATTGTACATATGTAGACTTATCTTTGTCACTATC
TGACATGCCCGTTCTAGCCCGAGCGAGCAGTACCACTTGATTCTCGAGTG
GGACTCTGGTTACCCCATACCACACTCTCACGCCTTCTATATCCTCACTG
CTCGACACTTCGCCCCGCGCTCTCACTCCCCTCTACATCATAAGTAGTGT
GTTGCGCTTCTGTGATGCGCGTGGCATAGATGGTCGCGTGTGCCGCCGCG
GTTGTTAGGGCGGGGGGAGGTCGTCGGCGGCAGGAACAGGGCGCAATGAG
TCGGTAGTGGCGGCAGCGGCCAAATACAGTGGTCCTACACTGTAGTCGCG
ACGCAGGTCCTCTGACCCACGACGATGGTTGCGCAAGCGTCAGTTGTCTG
CGCGCGCCAGACGTCCTCGCGAGTAGCGGGTGCGAGGACGAGTTGAGGTC
CGCGCGTGGGATAGCCCCGTATCCTTCATGTAGTGGTGCACGTGCGGTCT
CCAGAGGATTAGACTGTTTATAGGCCTGCTACGCGTTTATCCCTCTTCTG
TTATTATTTAATCGCATTATACCTCGACGGTGCAGTTAGCAGTGTGTACA
CGCGATTAGACCCAGTCTGAGATCACATGGATGTGAGACTCTTGCCAGGT
GCATGTCGAGCGACCGTCTATATACTGTTGTATACACGGACCTGGGTAGC
GTGCGGTGAGTAGCGTACATTCACGCGCATCGAAACTGCACAGCGCATAC
GATCGATCACCTCAGCGGTGTATAGTGTATCATACGCATCGACGGTGCCG
TGATCCACGCACATGCTACTGTTATGATTGTGCGCGCAGTAGTGTGTACT
GTTGTCATAATCGAAGTCATACACTCGCATGACGGTGTGTGATGTNGAGA
TCTCGTNAGGACGCTGCGGATAGTGTGACTGTGTCGCTCGATAGCTCGGC
GTAACAGTAGCACTTAATTAGCGCTGCGGCTCTCACACTAATAGGATATC
GTTCTGTCGTTCCGCCCGCTATTGTATTGCGTAGCTCGCTGCGATGCCTA
TCATCACATGATGTCTCTTCTATGTGGTTCATCATCGTACATAGACTGAG
GTGATGAGTGGAGGTAGCGTGATGTGACGGATGGTCTCCGTCGTGTCAAT
CGGACCTAGNCCAAACTGCATGCGGCATATATACGAACATGGGCTCACTG
CTTTGATTATATATAGCCGCGACAGTATCCCGCCTCAACTCCTAGCTGCC
TTGCTCGCGGCCTCCACCTCATTAGGCTTGGTTGTGATCGTAGACGCGGT
CGN
NCCCATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATGCTTAAGGACAGAAAGGAGGA
GTAAGAGAGAATGAAGAACAAGCACTGTCAAAATAAAGGCTGAAATGGAA
ATGGGCTCTGCTCTGGATGTTTGTCATTTTTATTATATCACCCTGCACAG
TTTCACCTTGGCAATTCTTTTTTTTTTTTAAAGTGATTTTAATTAAAAAA
AATCCAACAACTAAACTAGATTTACATAGGACTTCATAGAACTATAATAA
AGTAAATAATTCAAAATCACCTAAAATCACAATAAAGACTCATCTATCTG
GATGAACTGTGGCTGTGTTTAATGAACACGGAGGGAACTCAAATAGGTGA
AGCCCTGGGGCTGGTTTTCCAGATGAGCAGCACAGACAGCGTTTTGAGAG
AAGACTGAAAAGCCAGTTACCACCTAAAATCCACAGCGCGAACACCTGGG
GGTTAGAATCCTTCATCTGTGATTTGGAAGCCTGACCAATGTCTCCTCGT
CCCCAAGAACTTCAATGGCCACTAAAGGTTGTGTTTCCCTGGCCTGGCAA
TATCAGAGAATGGAGAGAGATGGACTTCAGTGTATGAACAGAATCCTTTT
GACTCCCCCAGTCAGCAGTCCAGTTCCAGAGCACATGACTTAGTGCCCCT
GAAAGAANGAGACAGTTCTGAATCAGCCTTAAAAANGTCTNAGAAGCAGG
NNCAGATGAACAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no507_d13.g1 MSMg01no507_d13.g1 CHROMAT_FILE:
MSMg01no507_d13.g1 PHD_FILE: MSMg01no507_d13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:41 2005
         (530 letters)



>mm_chr6_5746176_5747106
          Length = 931

 Score =  938 bits (485), Expect = 0.0
 Identities = 518/529 (97%), Gaps = 2/529 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   tgcttaaggacagaaaggaggagtaagagagaatgaagaacaagcactgtcaaaataaag 62
           ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 905 tgcttgaggacagaaaggaggagtaagagagaatgaagaacaagcactgtgaaaatatag 846

                                                                       
Query: 63  gctgaaatggaaatgggctctgctctggatgtttgtcatttttattatatcaccctgcac 122
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 845 gctgaaatggaaatgggctctgctctggatgtttgtcatttttattacatcaccctgcac 786

                                                                       
Query: 123 agtttcaccttggcaattcttttttttttttaaagtgattttaattaaaaaaaatccaac 182
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 agtttcaccttggcaattc-tttttttttttaaagtgattttaattaaaaaaaatccaac 727

                                                                       
Query: 183 aactaaactagatttacataggacttcatagaactataataaagtaaataattcaaaatc 242
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 aactaagctagatttacataggacttcatagaactataataaagtaaataattcaaaatc 667

                                                                       
Query: 243 acctaaaa-tcacaataaagactcatctatctggatgaactgtggctgtgtttaatgaac 301
           ||||||||  |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 666 acctaaaaggcacaataaagactcatctatctggatgaactgcggctgtgtttaatgaac 607

                                                                       
Query: 302 acggagggaactcaaataggtgaagccctggggctggttttccagatgagcagcacagac 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 acggagggaactcaaataggtgaagccctggggctggttttccagatgagcagcacagac 547

                                                                       
Query: 362 agcgttttgagagaagactgaaaagccagttaccacctaaaatccacagcgcgaacacct 421
           |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 546 agcgttttgagagaagactgaaaagccagttaccacctaaaacccacagcgtgaacacct 487

                                                                       
Query: 422 gggggttagaatccttcatctgtgatttggaagcctgaccaatgtctcctcgtccccaag 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gggggttagaatccttcatctgtgatttggaagcctgaccaatgtctcctcgtccccaag 427

                                                            
Query: 482 aacttcaatggccactaaaggttgtgtttccctggcctggcaatatcag 530
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 aacttcaatggccactaaaggttgtgtttccctggcctggcaatatcag 378


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 931
Length adjustment: 10
Effective length of query: 520
Effective length of database: 921
Effective search space:   478920
Effective search space used:   478920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)