BAC Information

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BAC

Clone NameMSMg01-507N05
Chromosome6 (Build37)
Map Location 60,660,106 - 60,660,350
singlet/doubletsinglet
Overlap genenone
Upstream geneEG634166, EG627108, EG434019, LOC671300, EG627178, LOC100041706, LOC100041717, A530053G22Rik, LOC667066, LOC100041726
Downstream geneSnca, ENSMUSG00000064018, Mmrn1, LOC100041756, LOC100041764, C130092O11Rik, LOC100042694
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-507N05.T7 (MSMg01no507_n05.b1)MSMg01-507N05.TJ (MSMg01no507_n05.g1)
ACCAG581882AG581883
length745797
length of high quality
(start - end)
249 (63 - 311)244 (80 - 323)
definitionCHROMAT_FILE: MSMg01no507_n05.b1 PHD_FILE: MSMg01no507_n05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:30 2005CHROMAT_FILE: MSMg01no507_n05.g1 PHD_FILE: MSMg01no507_n05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCGCTAAACGACTCCTATAGTCCGAAATCCGCGGAATTCTGCAATA
ACTTCTCTGAAGCTGGGCTTTTTTTAGTTGGGAGACTCTTAATGACTTTT
TCTATTTCTTTCGGGGACATGAGATTGTTTAGATCATTAATCTGATCCTA
ATTTAATTTTGGTACTTTGTATCTCTCTAGAAAATTGTCCGATTCATCCA
GATTTCCCTCTTTTGTTGAGTATTGGCATTTGTAGTAGGATCTGATGATT
TTTTTTTTTTTTGGATTTCCTCAGATTCTGTTGTTATTTTTCCCTGTTCA
TTTCAAATTGTTGTAATTAGAATACTGTCCCTGTGTCATCTACCTAATCC
GGTTTAGGGTTTATCTATCTTGTTAATTTTCTCAAAGAACCAGCACCTGG
TTTGGCTGATTCTTTGTATAGTTCTTTTTGTTTCCACTTAGTTGAGTTCA
CTTTTGAGTTTGATTATTTCCTGCCATCTACTCCTCTTGGGTGACTTTGC
TTCCATTTTTTCTAGAGCTTTTAGGTGTGCTGTCAGGCTGCTAGTGTATG
CTCCCTCCTGTTTCTTTTTGGAGGCACTTAGAGATATAATTTTTTTCCCC
TCTGAGGACTGCTTCCAATGTGTCCCATAAGTTTGGGTATGTTGTGGCTT
CATTTACATTATACTGTAAAAAGTCTTTAATTTCTTCATTTCTTCCTTGA
ACAAGTTTTCATTGAGTAGAGTGGTGTTCAGTTTTGATGTGTATG
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAACATTGTACATTCACACGTGCTTTCAG
ATGAAGGACCATGGACCAGCAGAGTCTGAACAGTAGCTGGGAAGCACAAA
TGTCAGTGAAGAGAGGGATGCTTTGCTGTCAGGCACACTGGTGAATGGCA
TGTGTGCAGACAGCAGGGTTGTTTCACAAACAGCATCTCTCTTGTCCTTT
CTTCCTTTGGGGGAGAATAACGTACTTGAAACCTTTGAGCCTCTATGGAG
GGATACAACAAGCCTCAGTGACACTCCCTCNGTAGAAGTGTGCTATCCTG
TCTTAAGGGGAATTGCACAAGAAAGGAAGAGCAGGATTTTCTGTGAGCTT
AGATAAGGTGTGTGTGTGTGCGCGCGTGTGTGTGTGTGTGTGTGTGTGTC
ACCNNCCCCCCCCCNNCCCTTTTCTTTCCTTCTTCTTNNTTCCCTCCTTT
TCCTTNTCTTTCTTCTTCCTTTTCCTTTTTTTCTTTCTTTTCTTCTTCTC
TCTCTTTTTTTCTTCCCTTTTTTTTCTTTCTTTCCTTTCTTTTTTTTTTC
CCCCTCTCCTCNTCCCCTCCCCCTTCCTTTTCTTCTNCTCTCTTTTCTTT
TTCTCTTTTCTTTCCCTTTTTTCTTTTTTTTTTTTTTCCTCTTTTTCTTC
CCTTTTTCCTCTTCCTTTCCTTTTCTCTCTTCTCCTTTTTCTCTCTTCTT
CTTCNTTTTTTCCTCTCCTTTCTCTTTTTCTCTTTTTTTTCTCCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no507_n05.g1 MSMg01no507_n05.g1 CHROMAT_FILE:
MSMg01no507_n05.g1 PHD_FILE: MSMg01no507_n05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:30 2005
         (244 letters)



>mm_chr6_60659906_60660550
          Length = 645

 Score =  443 bits (229), Expect = e-129
 Identities = 241/245 (98%), Gaps = 1/245 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tacattcacacgtgctttcagatgaaggaccatggaccagcagagtctgaacagtagctg 60
           ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 445 tacattcactcgtgctttcagaggaaggaccatggaccagcagagtctgaacagtagctg 386

                                                                       
Query: 61  ggaagcacaaatgtcagtgaagagagggatgctttgctgtcaggcacactggtgaatggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggaagcacaaatgtcagtgaagagagggatgctttgctgtcaggcacactggtgaatggc 326

                                                                       
Query: 121 atgtgtgcagacagcagggttgtttcacaaacagcatctctcttgtcctttcttcctttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgtgtgcagacagcagggttgtttcacaaacagcatctctcttgtcctttcttcctttg 266

                                                                       
Query: 181 ggggagaataacgtacttgaaacctttgagcctctatggagggatacaa-caagcctcag 239
           ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 265 ggggagaataacgtacttgaaacctctgagcctctatggagggatacaaacaagcctcag 206

                
Query: 240 tgaca 244
           |||||
Sbjct: 205 tgaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 645
Length adjustment: 9
Effective length of query: 235
Effective length of database: 636
Effective search space:   149460
Effective search space used:   149460
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)