Query= MSMg01no508_j03.b1 MSMg01no508_j03.b1 CHROMAT_FILE:
MSMg01no508_j03.b1 PHD_FILE: MSMg01no508_j03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:31 2005
(672 letters)
>mm_chr6_6036594_6037663
Length = 1070
Score = 1178 bits (609), Expect = 0.0
Identities = 654/669 (97%), Gaps = 4/669 (0%)
Strand = Plus / Plus
Query: 5 gaattcagaactc-taccaaaacactccaggagggtttgatggtgttcttagatgatgca 63
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagaactcaaaccaaaacactccaggagggtttgatggtgttcttagatgatgca 264
Query: 64 aatgaagtctttcggaatatctaggtagagtcacaactcaaaactatccataatccaatc 123
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 265 aatgaagtctttcggaatatctaggtagagtcacaactcaaaagtatccataatcaaatc 324
Query: 124 tatccactaaatttcttctctcaaggaataactgagtaggagagcatagctaagcaacat 183
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tatccact-aatttcttctctcaaggaataactgagtaggagagcatagctaagcaacat 383
Query: 184 gaggtcattacctaggtctgggggtggggcgcggggggctgaagaggttgaaaggtcaac 243
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct: 384 gaggtcattacctaggtctgggggtggggcgc-gggggctgaagagcttgaaaggtcaac 442
Query: 244 tggaagggccaggtgcctagggagaacatgaagcaaattctcaaggcaataaataccacg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tggaagggccaggtgcctagggagaacatgaagcaaattctcaaggcaataaataccacg 502
Query: 304 gagaggggagactgacagcagacagctaagaggtgtggagagatgtaaagtcactgtgag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gagaggggagactgacagcagacagctaagaggtgtggagagatgtaaagtcactgtgag 562
Query: 364 agggaccaaccggtctagtggagaaaatgaagacagcattgagtttccagaagtgccaaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 agggaccaaccggtctagtggagaaaatgaagacagcattgagtttccagaagtgccaaa 622
Query: 424 tttcaagaaccttgcatgttatttcactatcccctcaaggtaagcccttattggttattg 483
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 623 tttcaagaaccttgcatgctattttactatcccctcaaggtaagcccttattggttattg 682
Query: 484 ctgctgaggtgagttcctgctgctcggtgaacagtggcaatctggagtaggaaagtgaac 543
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 683 ctgctgaggtgagttcctgctgctcggtgaacagtggcaatctggagtaggaaagtgacc 742
Query: 544 gtgggaatcaacagaagacaggaagacgctggacctgctcggaagacttctcagacagaa 603
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gtgagaatcaacagaagacag-aagacgctggacctgctcggaagacttctcagacagaa 801
Query: 604 ggcaatgaggatgctcccgaacactgcttctcaaatctgttagtgacttacaggtcactg 663
|||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 802 ggcagtgaggatgctcccgaacactgcttctcaactctgttagtggcttacaggtcactg 861
Query: 664 ctgtattga 672
|||||||||
Sbjct: 862 ctgtattga 870
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1070
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1060
Effective search space: 701720
Effective search space used: 701720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no508_j03.g1 MSMg01no508_j03.g1 CHROMAT_FILE:
MSMg01no508_j03.g1 PHD_FILE: MSMg01no508_j03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:31 2005
(628 letters)
>mm_chr6_6159685_6160712
Length = 1028
Score = 948 bits (490), Expect = 0.0
Identities = 514/522 (98%)
Strand = Plus / Minus
Query: 107 gggctttactgctgtgatcagacaccatgaccaaggcaactcttataaggacaacattta 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1028 gggctttactgctgtgatcagacaccatgaccaaggcaactcttataaggacaacattta 969
Query: 167 attggggctggattacaggttcagaggttcagtcccttatcatcaaggtgggagtgtagc 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 968 attggggctggattacaggttcagaggttcagtcccttatcatcaaggtgggagtgtagc 909
Query: 227 cacgtccaggcaggcagggtgcgggagccatacctcctaatactgccactccctaggcca 286
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 908 caggtccaggcaggcagggtgcaggagccatacctcctaatactgccactccctaggcca 849
Query: 287 agcatatacagcccatcacaatgggagagtcagatatttcatgatatacttactgtttat 346
|||||||| | ||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 848 agcatatagaacccatcacaatgggagagtcagatatttcatgacatacttactgttcat 789
Query: 347 gccaagatagttcttgtataagagctgtgtagtaccatgggtaaggaagctgtgtaaggg 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 gccaagatagttcttgtataagagctgtgtagtaccatgggtaaggaagctgtgtaaggg 729
Query: 407 agactaacttgaagagatgggtggtgcgtgttcaggagttatcaggattatacaggatcg 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 agactaacttgaagagatgggtggtgcgtgttcaggagttatcaggattatacaggatcg 669
Query: 467 gatttgcctgttctgagtactggtcactgtgtgaatggagctggtggcatggtagcattt 526
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 ggtttgcctgttcttagtactggtcactgtgtgaatggagctggtggcatggtagcattt 609
Query: 527 ctgcagagaactggctagctcccgagttgactttccttaagtaggaagaagctaccaggg 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 ctgcagagaactggctagctcccgagttgactttccttaagtaggaagaagctaccaggg 549
Query: 587 cccttcttcgacaatccttattcagtgactagaaagttggag 628
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cccttcttcgacaatccttattcagtgactagaaagttggag 507
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space: 629124
Effective search space used: 629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
