Query= MSMg01no509_d08.b1 MSMg01no509_d08.b1 CHROMAT_FILE:
MSMg01no509_d08.b1 PHD_FILE: MSMg01no509_d08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:23 2005
(575 letters)
>mm_chr6_39292268_39293242
Length = 975
Score = 1035 bits (535), Expect = 0.0
Identities = 564/575 (98%), Gaps = 6/575 (1%)
Strand = Plus / Plus
Query: 2 gatggcaaataccttttcccactgagctatctcaccagtcctttaaaaacatcctgtcaa 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 gatggcaaataccttttcccactgagctatctcaccagtcctttaaaaacatcctgtcaa 257
Query: 62 cgtacagtttggataacataaagacacatccactacaagggcagagcacaatagttttta 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 cgtacagtttggataacataaagacacatccactacaagggcagagcacaatagttttta 317
Query: 122 gtggatctgaattgatgcagcccatcattaatgccatttagcaatgttatggccagctcc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gtggatctgaattgatgcagcccatcattaatgccatttagcaatgttatggccagctcc 377
Query: 182 ataagcagccagcccactggcagtcactcctgaggcaccacagatccagtctttt-tttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 378 ataagcagccagcccactggcagtcactcctgaggcaccacagatccagtcttttctttt 437
Query: 241 cttatttttttaccaattttagacatttcctatgaatgaag---gcacactgtgtctccc 297
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 438 cttataaatttaccaattttagacatttcctatgaatgaagaaggcacactgtgtctccc 497
Query: 298 atgactggcttctttcaatagcatatttctgaggttcctctatgctgtggcatcttccaa 357
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 498 atgactggcttctttcaatagcatatttctgaggttcctctatgctgtggtatcttccaa 557
Query: 358 gcctttgtcaccttctaactgataaataatcctccac-gttatggatcggccacatcctg 416
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 558 gcctttgtcaccttctaactgataaataatcctccactgt-atggatcggccacatcctg 616
Query: 417 cttatgcattcagcagctgctggatggacacttgtgctatttctacagtaagtgggtaaa 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 cttatgcattcagcagctgctggatggacacttgtgctatttctacagtaagtgggtaaa 676
Query: 477 tgtttaagtttcagcgtagacatttgacgcttggactcgtttctccttagtagataatgc 536
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tgtttaagtttcagtgtagacatttgacgcttggactcgtttctccttagtagataatgc 736
Query: 537 aatctcatccaggaatatgtgtccaaacgcactaa 571
|||||||||||||||||||||||||||||||||||
Sbjct: 737 aatctcatccaggaatatgtgtccaaacgcactaa 771
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space: 545225
Effective search space used: 545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no509_d08.g1 MSMg01no509_d08.g1 CHROMAT_FILE:
MSMg01no509_d08.g1 PHD_FILE: MSMg01no509_d08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:23 2005
(609 letters)
>mm_chr6_39536455_39537470
Length = 1016
Score = 1098 bits (568), Expect = 0.0
Identities = 601/616 (97%), Gaps = 7/616 (1%)
Strand = Plus / Minus
Query: 1 tctcccatctccccacctccctcccagcaggcagaagggtatactagggctactagtggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 tctcccatctccccacctccctcccagcaggcagaagggtatactagggctactagtggc 757
Query: 61 acccaggacaagggtacatccctcacctaagcaccatcaacaaaagccaagaagggaaag 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 acccaggacaagggtgcatccctcacctaagcaccatcaacaaaagccaagaagggaaag 697
Query: 121 aatgaaaataatctggctggacgctttctatgtctttaaatatattttctacatctaaag 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 696 aatgaaaataatctggctggaccctttctatgtctttaaatatattttctacatctaaag 637
Query: 181 atta-------ttgactacatagattgagatatcctcagactttgttctgaagggatcac 233
|||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 attattgtactttgactacatagattgagatatcctcagactttgttctgaagggatcac 577
Query: 234 aagcccactgggtctatatttgaagataaagaaatagtcactatgcaaaaaaagctgagg 293
|||||||||||| ||| || ||||||||||||||||||| |||||||||||||||||||
Sbjct: 576 aagcccactgggcctacatcagaagataaagaaatagtcattatgcaaaaaaagctgagg 517
Query: 294 aaaagaaggtttacccattctactgcctgtgccctactccacccttttcccaagacttct 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 aaaagaaggtttacccattctactgcctgtgccctactccacccttttcccaagacttct 457
Query: 354 ctttaaccacacctcaccttatgggtcatcagtagcttaaagacactggataggaggctg 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ctttaaccacacctcaccttatgggtcatcagtagcttaaagacactggataggaggctg 397
Query: 414 gaaacatgaagctgcaaaacaaaaggtcccagtagaatccagaagtatttcttccccttc 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gaaacatgaagctgcaaaacaaaaggtcccagtagaatccagaagtatttcttccccttc 337
Query: 474 cagagtcctgtcctttgacacttaccactccacatcactacgctcacaagtatgtgcaca 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 cagagtcctgtcctttgacacttaccactccacatcactacgctcacaagtatgtgcaca 277
Query: 534 cactacccaacaaacatcacaaacgaatttaccaatagaggtccatcccacctcaagttt 593
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 276 cactacccaacaaacatcacaaaggaatttaccaatagaggtccatcccacctcaagttt 217
Query: 594 caagtcacaaatgcct 609
||||||||||||||||
Sbjct: 216 caagtcacaaatgcct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1016
Length adjustment: 10
Effective length of query: 599
Effective length of database: 1006
Effective search space: 602594
Effective search space used: 602594
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
