BAC Information

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BAC

Clone NameMSMg01-509H10
Chromosome6 (Build37)
Map Location 112,983,802 - 112,984,255
singlet/doubletsinglet
Overlap genenone
Upstream gene1700054K19Rik, Lmcd1, D630042P16Rik, LOC619975, Cav3, Oxtr, LOC434076, EG434077, Rad18, Srgap3, EG666387, EG620161, LOC666397
Downstream geneThumpd3, EG434078, Setd5, Lhfpl4, Mtmr14, Cpne9, Brpf1, Ogg1, Camk1, Tada3l, Arpc4, Ttll3, Rpusd3, Cidec, Jagn1, Il17re, Il17rc, Creld1, Prrt3, Tmem111, Fancd2, 4931417G12Rik, 6720456B07Rik, Vhlh, Irak2, Tatdn2, Ghrl, Sec13, Atp2b2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509H10.T7 (MSMg01no509_h10.b1)MSMg01-509H10.TJ (MSMg01no509_h10.g1)
ACCAG583133AG583134
length782747
length of high quality
(start - end)
238 (77 - 314)454 (119 - 572)
definitionCHROMAT_FILE: MSMg01no509_h10.b1 PHD_FILE: MSMg01no509_h10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:42 2005CHROMAT_FILE: MSMg01no509_h10.g1 PHD_FILE: MSMg01no509_h10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTCAATATTTGCGGTCGCNAAACGAATCACAATCAAAACAGGATCCGCG
GAATTCATCAATTGCAAAAAACTTGTGTTTTTTTTTTTTTTTTCAAGACA
CTGCTAAGCAATAGAGTGTTTGTGGTTTACGCATGCCTGTGGTCCCCTGC
ACTCAGGAGACTGAGGCAGGAGGATCCCAACCTTCAAGGAAGCCTGGGCT
ATTTTGTGAGACCCTGCTTAACTGACATGGGGCCAGTGAGACAGCTTGTA
CTTGCCACATAAATCTGATGATCAGAATTTGACCTCCAGATTTCACAGTA
GAAGGAAAGAACTGCTNACTGCTAGTTAACCTCTGACCTCTATGAATGTA
CTACAGCCAACTCAGCCGATGATGATGATAACAATGATGATGATGATGGT
GGTGGTGGTGGCGATGATGGTGTTGTTTTCTTCTCCTTTCCCTTTCTCCC
CGTTCCTTCCTCTTCCTTCTTTTTCCTGTCTCCGTCCTTTTGCTTTTTTT
TGCTTCCTGCTCCCCTTCCCCTTTTCTCCCTTTTTTTTCTTTTTTGCGTT
CCCGCTTCCTTGCTTTTTCTTTCCTTTCTTCCTTCCCCGTTTTTTTCCCT
GCCCCTTTTTTTTCCCCTTTTTTTCTCCTTTTCCTCTCCTTCTCTCCCCT
CCCCCCTTCCCCCTTTTTTTTTTTTCCTTTTCGCGCCATTCTCCTCCTCC
TTTTCTTTCCCCCTCTTCTTTTTCGTCCTCCCTCTCTTTTTCCCCGGGGT
CTTTATTCTTCCTCCGCTCGTTTTCTTCTTTT
CCCAATTATAGTGGTTAGGCCGGGGGGCCGCCTTTTCAACAAATTTAGGG
GAACTATAGAATCCCCCACGAAATTCACTATGTAAACCTGACTGGCCTCA
AACTCACAGAGATCCACCTGCCTCTGCCTCCTGGACTTAAAGTGCTGGCG
CTAAATAAAGGTGTGCTATCATGCCTGGCTTCTCTCTGGTCTTCTGTTAT
TACCAAGTTCTGAGCCAGCCTGGGGAGAATGGAGGCAGCAGGTATAGTTT
AGGGTCCTTTGGCCCCAGTAAGTTGGAACCAATAGTCTGAATGACTCAAA
ATATCCCTTCCCTGAATTTATGTCAGTTTATTTATAAAGAAGCCTGACCC
CCAAGATGATCAGGTGTTTGGGGGAAGGAGCCAAAATCAATCTTTCAGGA
AGGTGATAGGGAACCCCAGAGACTTGTCCTTTATTCTACCTTGACTTCAA
AAACACAGTTCTTAGGTGACAGGAGAATATATGCGGTACTCTGTTTAACA
TTAGCAGGGCTAATTCTGCTGTGTTGAGAACTGTAATAATACTGCTCAGC
ACTGGGATGGGCTATCTGCAGTCACTGGTCCGCAAAGTCACTATAGTGCG
CATCTGAAGATGAAAGACTAGTAGGAAAGATAAGCAAGGCCTTCCTATCT
CAGTGCCTATCCAAGGAAATAGAGATATCTGCTATTTGTTCCATCTATCA
GGTCAATCCGGCTTCTTCCATCTAGCCTGATAAGTCTTGCTTCTAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_h10.g1 MSMg01no509_h10.g1 CHROMAT_FILE:
MSMg01no509_h10.g1 PHD_FILE: MSMg01no509_h10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:42 2005
         (454 letters)



>mm_chr6_112983602_112984455
          Length = 854

 Score =  762 bits (394), Expect = 0.0
 Identities = 439/454 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcctctgcctcctggacttaaagtgctggcgctaaataaaggtgtgctatcatgcctgg 60
           ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct: 201 tgcctctgcctcctggacttaaagttctggcgctaaataaaggtgtgctaccatgcctgg 260

                                                                       
Query: 61  cttctctctggtcttctgttattaccaagttctgagccagcctggggagaatggaggcag 120
           |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 261 cttctctctggtcttctgttattaccaagttctgagccagtctagggagaatggaggcag 320

                                                                       
Query: 121 caggtatagtttagggtcctttggccccagtaagttggaaccaatagtctgaatgactca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caggtatagtttagggtcctttggccccagtaagttggaaccaatagtctgaatgactca 380

                                                                       
Query: 181 aaatatcccttccctgaatttatgtcagtttatttataaagaagcctgacccccaagatg 240
           ||||||||||||||||||  || ||||||||||||||||||||| |||||||||||||||
Sbjct: 381 aaatatcccttccctgaaactaggtcagtttatttataaagaagtctgacccccaagatg 440

                                                                       
Query: 241 atcaggtgtttgggggaaggagccaaaatcaatctttcaggaaggtgatagggaacccca 300
           ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||   ||
Sbjct: 441 atcaggtgtttgggggaagaagccaaaagcaatctttcaggaaggtgatagggaaggtca 500

                                                                       
Query: 301 gagacttgtcctttattctaccttgacttcaaaaacacagttcttaggtgacaggagaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagacttgtcctttattctaccttgacttcaaaaacacagttcttaggtgacaggagaat 560

                                                                       
Query: 361 atatgcggtactctgtttaacattagcagggctaattctgctgtgttgagaactgtaata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atatgcggtactctgtttaacattagcagggctaattctgctgtgttgagaactgtaata 620

                                             
Query: 421 atactgctcagcactgggatgggctatctgcagt 454
           ||||||||||| |||||||||||||| |||||||
Sbjct: 621 atactgctcagtactgggatgggctacctgcagt 654


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)