BAC Information

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BAC

Clone NameMSMg01-509I09
Chromosome6 (Build37)
Map Location 107,446,930 - 107,447,153
singlet/doubletsinglet
Overlap genenone
Upstream geneCntn4, Il5ra, Trnt1, Crbn, Ppia-ps6_1128.1
Downstream geneLrrn1, Setmar, Sumf1, LOC100043718, Itpr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509I09.T7 (MSMg01no509_i09.b1)MSMg01-509I09.TJ (MSMg01no509_i09.g1)
ACCAG583179AG583180
length747852
length of high quality
(start - end)
322 (326 - 647)224 (79 - 302)
definitionCHROMAT_FILE: MSMg01no509_i09.b1 PHD_FILE: MSMg01no509_i09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:47 2005CHROMAT_FILE: MSMg01no509_i09.g1 PHD_FILE: MSMg01no509_i09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCAATAATTGCGGCCGCGAAACGACTCACTAGTCAAAAATGATCCGC
GGAATTCTTCAGTATCTGAAAAGAAAGAAAAGGATAGAGAGAAGGTCATG
TATACCTCCCCACACTCTGGTTGGGCCCGACCACCTATTTCACCTTTTTC
ATAAGTGTACAGATATACTTATATACATACACATAGGTATGCATGTACAT
ACATATAGACAGAGATGCATACATTTAGTGGATGGAGCAGAGACCTAAAT
TTCACACAGTATTTTTCTCTTAGCCTTATTTCACCTTTTCACACAAAAGT
TCTTCATAAAATTACTNCATAGATGAAGTGTTACACAAAAGGGGAGTTAC
AGAAGAATATCAATAAGTTCAAAGCAGTGTTTCATTCTGTAAGCTCATTA
TAAGTTCAAAGCAACAGCTTCACATGGCCTTGCTGTATCATAGTGGACAC
CTGTGGCTTCATCCTTGGACCTAACCTAGGTGAATGTTTTTTCTTGATCA
TAAATCTGTCTCAAGCCTGTTTCTCTTCTTAGTGTAATTCATGAAATCTC
ATTGTATTCCTTATTATGCACCCTTTACTTACTATTCTATGAGGAGGGGC
CACATTCCATTCTTAATACTTATATTAAATATTTCTGGCAAAACAACTAA
TATCGTATTGTTAAGCTTTCTTCCTAAAATAACTTGAATCAAATCAGGAA
TTCTAGAAAGCCATTAAATCATCTAAATAGTATTAATTTATGAAAGC
NCGCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACAAGTTAAGCCCAGCGATGCC
TGAATTTTGTTGTCTGTTGTATTGTTTCCATATTTAATTAATGGCACTTC
AGTGATAAATAAATTTTAAATGATAAAACTACCAATTAGAGCCAAGGGAT
GTGATAATTTTTTTAAGGTCCACAAAGATTACTTAAAATTCTAAGACTTT
AAAAAATACGGTCAGAGGACAGATTGGTGGGGAGGGAGGGGGTGAGGTAA
TAAAACACGCCACCCTTTTTTCTTTTTTTTCAAACCCCAAGATTTCCCTT
CTCACCTTCACTTTTTCTATTTTTCATCTATGATTCTTTTTGCCCTCTTG
CCATTCGTTCTCTTTATCCCTCCCCCCCTTTTCCTTCCTCTCTTCATCGT
TGCTTTGTTTTACTTTCTTTTCTTTCCTCTTCCTTAATTACTCTAATACC
CTCTTCTCTTTATACTTTATTCTTTAATTTAACTTTTTTTTTTTCCTTTC
TCCCCGCCTTTTTATTCCCTTTTTCCCCCTTTTTCCCACACCATCCCCCT
TTCTCCCACTTTTTTATTCTCATTCCTCTTTATTAAATATAACTTTAAGG
CCATCCCTTTTATCTTTCCCCCTTCCAATTTCATTTTATCCTCACTTTTT
ATCTCCTTTTCTTCCTCTTTTTTCTTTTTCCTACCCTCTTTTTCTTCCCC
TTCCATTCACCCTTTTTCCCTATTCCCGCTTCCATTTTTCTTTCTTCCCC
TTTCTCCTCCGCCCCTCTTCCTCCTTTTCTCTTTTTTTTTCCCCTTCCCT
CN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_i09.g1 MSMg01no509_i09.g1 CHROMAT_FILE:
MSMg01no509_i09.g1 PHD_FILE: MSMg01no509_i09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:47 2005
         (224 letters)



>mm_chr6_107446730_107447353
          Length = 624

 Score =  418 bits (216), Expect = e-121
 Identities = 222/224 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaagttaagcccagcgatgcctgaattttgttgtctgttgtattgtttccatatttaat 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaagttaagcccagcaatgcctgaattttgttgtctgttgtattgtttccatatttaat 260

                                                                       
Query: 61  taatggcacttcagtgataaataaattttaaatgataaaactaccaattagagccaaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taatggcacttcagtgataaataaattttaaatgataaaactaccaattagagccaaggg 320

                                                                       
Query: 121 atgtgataatttttttaaggtccacaaagattacttaaaattctaagactttaaaaaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgtgataatttttttaaggtccacaaagattacttaaaattctaagactttaaaaaata 380

                                                       
Query: 181 cggtcagaggacagattggtggggagggagggggtgaggtaata 224
           | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagtcagaggacagattggtggggagggagggggtgaggtaata 424


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 224
Length of database: 624
Length adjustment: 9
Effective length of query: 215
Effective length of database: 615
Effective search space:   132225
Effective search space used:   132225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)