BAC Information

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BAC

Clone NameMSMg01-509K20
Chromosome6 (Build37)
Map Location 20,302,750 - 20,303,441
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100040838, Kcnd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509K20.T7 (MSMg01no509_k20.b1)MSMg01-509K20.TJ (MSMg01no509_k20.g1)
ACCAG583297AG583298
length7741,570
length of high quality
(start - end)		696 (44 - 739)---
definitionCHROMAT_FILE: MSMg01no509_k20.b1 PHD_FILE: MSMg01no509_k20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:59 2005CHROMAT_FILE: MSMg01no509_k20.g1 PHD_FILE: MSMg01no509_k20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCATTATATGTATACTCTAAGTCCTGTATTCTGTCAAGTGCTTTGTA
GAAGATGTGCAATATCAAAGGTCTTTTGATGTCTATTATTTTCTTGTAGT
TTCTAGTAGGTTCTGTGTGATATTCTATGTCCATGATTCTGAAATAAAGA
GTGTAGAAGCATATCATCACCATACTGTAACCAACTCTAAATCCTGTATG
CTGCCAAGTGCTATATAGAAGATATCACCATGTTCTCCCACAATCACTCT
GCATACTTCACCTTGATATTCAAGTCACTATGCCACCTAATAGTGTGTTT
CATTAATGTAAATGTTTTAGCTCAATTTCTGACAGGCAAAACATTAAGAT
AACCTGCTAAATTACTTGCTTTGGATAAAGAACTTGAACATATGCAGGGA
ATATGCTACTATCTAGTTACAATAAACTTTTGGAATGATTCATCTATACT
TAAGTAGTATTGAATTGCCCATTAAAGAAACATAGTTATCCATTTATTAT
AAAGATAAAAACAGTGTGAATTACATTTAATGATAAATTAAGGATAAATA
TCAATTTAATATGTACTTTAATATGTAGATAGCATTAAGATCATGTAGTT
GAATTGGGAAATTAGAACATAAATTTCATTTATCATATCACAGACATGGT
TAGCAAGGATGTTTAAAAAGTTCTTCTTGTGCTTATTAGTTCATTCTGTA
GAATAATAACAGCACAGAAATTCC

CTGATATTACAGAGCAGAACAGGAANCACAGCCGAGAACGAGAGCAGGAA
TTCTCTCACAGACAAATAAGGAGANGAAGACGCGAGCAAAGCAAGAGTAC
TGCCCGAGGAGGGGAAGTAGGAGTGCGCGGCGGCCGGTGTCGAANGACGG
CGCGGCGCCGCGCGCGCACACTGACCCTCCAATACATGTGTCGTATCGTC
GCCGTTACCCACGTTGGGTACTCGTATAAAACATCTATCAATTATGTCGT
ACTACAGCGTATNATTGTGTGCAAGCACGTAAGGAACCTGAGCGACACGT
ATTAACACAATTTAATAGAACACACCGAAGCACCTNAACCACGGCTTGCA
CACGACGCATTAACANCAAGAAATACTATAGTGTATAGAACACCGAGACC
GTCCGACCCCGCTAATTTATGCCGTGATTTACGACGTTCTATGAACAGCG
CAGCGGACGAGCGAGCCGCGGCGCCGCGATATCTCGCGACGGCGCGATTG
TGTGCGCGAGGCGTATTGCGCGTTTGGANCGATCTTATTCATCTTATATT
GTGTGTGCGTTGCGCATATNTAGCCATCGCATCTTACTGTGCTTTCATAT
GTATGTGCACCTCTACGATACGCACGCGGCTGTAAAACGCAGTATATGCG
GCGTAATGTGTAGCATCAGCGAGTACGATGAGATGACGGAGCCAGCGCGC
GCTTCATCTCATCTGCGCACAGCGGGTATATGACCTGTGCGTACGCCGCT
CCGGCGGGTATGAAGAGGAGATATACTAATTGTGCACGCAACAAGATCTG
ATGACGCTGTCGGTAATAATGAAGACCGAGATAGTACGCGATACTCGTAT
AGACAGCTAGTTATAGTCGAGGGACCGATGTGCCCAGACGGTAGATACTA
AAGCGGTAGATAGATATAAATATANGCGAGGAGCATAGCGTCCGNATACG
AGGAATGACTGTTGTTAGCTGATGCGCGGCGCCCGTCATTGATCACTAAT
ATTATAGAACGACACTAGGATGCAGTTATACAGGAGAACGAGTAGAGTAT
AACGACGAATCGACCCACACCGTACTATAACGCGACGCCGACCNACGTTT
GTATATATCGCACACATATTATTCGCGTGCTGGTGTATTAGCCNCCACGA
GGACGACAAGATGTAACCATAATATGTATGTATTATGATATATCACATGT
CGGNCTCAGAACGAGTAGACCGCGAGAGTACGCGTGATGTTGTTGTATTA
GACGCGCGAGATGGCGAACGCGCGACGAAGGCGAGCACGCACTACATTAT
TACGCCTGGCCGCCNACTTATGTCTATAGCGCGAGNTCAAGCGCTCATCT
TATTCTGCGTGTGTGCGCACTGTACGCGACGCGCGACCTACACTATGAGC
GTGTCTNCCCGCGGTCGCGCGCGCATCTTATCAAGACGCNGATATTCATG
NGACGACCCCACGCCATNGTGNTGNTTATCCGATGCGCGANTAATGCTAC
GTATGCCGTATGTCGTGCGCGTAGAGTCGACGTATCATCAGATAATCGTA
GGACGAGATACTATATGCGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_k20.b1 MSMg01no509_k20.b1 CHROMAT_FILE:
MSMg01no509_k20.b1 PHD_FILE: MSMg01no509_k20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:59 2005
         (696 letters)



>mm_chr6_20302546_20303641
          Length = 1096

 Score = 1307 bits (676), Expect = 0.0
 Identities = 688/692 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcattatatgtatactctaagtcctgtattctgtcaagtgctttgtagaagatg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcattatatgtatactctaagtcctgtattctgtcaagtgctttgtagaagatg 264

                                                                       
Query: 65  tgcaatatcaaaggtcttttgatgtctattattttcttgtagtttctagtaggttctgtg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgcaatatcaaaggtcttttgatgtctattattttcttgtagtttctagtaggttctgtg 324

                                                                       
Query: 125 tgatattctatgtccatgattctgaaataaagagtgtagaagcatatcatcaccatactg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgatattctatgtccatgattctgaaataaagagtgtagaagcatatcatcaccatactg 384

                                                                       
Query: 185 taaccaactctaaatcctgtatgctgccaagtgctatatagaagatatcaccatgttctc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taaccaactctaaatcctgtatgctgccaagtgctatatagaagatatcaccatgttctc 444

                                                                       
Query: 245 ccacaatcactctgcatacttcaccttgatattcaagtcactatgccacctaatagtgtg 304
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccacaatcactcagcatacttcaccttgatattcaagtcactatgccacctaatagtgtg 504

                                                                       
Query: 305 tttcattaatgtaaatgttttagctcaatttctgacaggcaaaacattaagataacctgc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 505 tttcattaatgtaaatgttttagctcaatttctgacaggcaaaacattaagataacctgt 564

                                                                       
Query: 365 taaattacttgctttggataaagaacttgaacatatgcagggaatatgctactatctagt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 taaattacttgctttggataaagaacttgaacatatgcagggaatatgctactatctagt 624

                                                                       
Query: 425 tacaataaacttttggaatgattcatctatacttaagtagtattgaattgcccattaaag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tacaataaacttttggaatgattcatctatacttaagtagtattgaattgcccattaaag 684

                                                                       
Query: 485 aaacatagttatccatttattataaagataaaaacagtgtgaattacatttaatgataaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaacatagttatccatttattataaagataaaaacagtgtgaattacatttaatgataaa 744

                                                                       
Query: 545 ttaaggataaatatcaatttaatatgtactttaatatgtagatagcattaagatcatgta 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttaaggataaatatcaatttaatatgtactttaatatgtagatagcattaagatcatgta 804

                                                                       
Query: 605 gttgaattgggaaattagaacataaatttcatttatcatatcacagacatggttagcaag 664
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 805 gttgaattgggaaattagaacataaatttcatttatcatatcacagacatggttagcagg 864

                                           
Query: 665 gatgtttaaaaagttcttcttgtgcttattag 696
           ||||||| ||||||||||||||||||||||||
Sbjct: 865 gatgtttcaaaagttcttcttgtgcttattag 896


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1096
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1086
Effective search space:   744996
Effective search space used:   744996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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