BAC Information

Click to search

BAC

Clone NameMSMg01-510D18
Chromosome6 (Build37)
Map Location 50,677,913 - 50,678,246
singlet/doubletsinglet
Overlap genenone
Upstream geneNpy, LOC100041653, LOC624524, Mpp6, Dfna5h, LOC100041681, Osbpl3, Cycs, 4921507P07Rik, LOC213320, EG666302, EG666308, EG666310, Npvf
Downstream geneLOC100040877, EG625167, Nfe2l3, Hnrpa2b1, Cbx3, Snx10, LOC100041820
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510D18.T7 (MSMg01no510_d18.b1)MSMg01-510D18.TJ (MSMg01no510_d18.g1)
ACCAG583719AG583720
length755757
length of high quality
(start - end)
334 (328 - 661)325 (329 - 653)
definitionCHROMAT_FILE: MSMg01no510_d18.b1 PHD_FILE: MSMg01no510_d18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:45 2005CHROMAT_FILE: MSMg01no510_d18.g1 PHD_FILE: MSMg01no510_d18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGTGCAAAACATGGGCGGA
ATCTAACATATTCCCATAAACTGAGACAAAATCTGATGCTTTGCAAAATA
AAGGTTATAATATAGATCAATAACGATATTTCTTACCATGGTGAAGCTAA
CTGATTTGCCCATATCAAACATGAAATTAGATACAGGGTTACTTACCACA
TTCAAAAAAGCTGTAGAGCTGTAACTCAGCAGGAAGATCAATAACTTTAC
CTATTTCTCAGTGGGTGGGTGTGTGAAATACATCTGCATACAGCATGTTG
TCAACAAGACTGGGACCCATTGTGTTCCCCAAGACTGCAATGGCCCTTGC
TCCAGATGACAGAAATCGCTTGCAAGGCAAGCTACAGCATCCTTCTAATC
TCCCAACTCAGGTCTATACTTTTCCTTCTCACCCTTCCATGGGTATCAGT
GTAGAAGTACCAAGTGTCCACTTATTAGTTGAGTTGCCTTTAAGTAGCTG
AAAACCCAGACAAATCTGCTCAAAGACCAAAGAAAGTACAGGGGGTTGGG
AGATTAGAAAGTCCTGAGAAGAAAAAAAGTCTATAGATGTGGATCCCTGT
GCCATAGAAGCATCAAGCACCTTCAGGACAGAGCATTACCCTGGAGTGTG
TGATAATGGCGACAACTTAGAAGTGGTGGCTGTCGCCCACATATCTATCA
AATGCTAGTTCCAACCCCCATCTTGGCAAGAACAGCATAGGCTATGCCGA
GAATG
CAGTTCTGTGTGTAGTGTTGGGGGAGGTCGGGGCGTACCCCATCAGGGGG
CACNATAGAAGGATTACCAACAAACGGGGAGNACAAACTCCGGAGAAGAA
AGGCCTTTGAAGAAAACCTCTGACACAAGAGGACTGTGATTAGCAACTGG
ATCAAATACGCACAATGGGAGGAAAGCCTGAAGGAGCTCAATAGGGCTCG
ATCCATATACGAGCGTGCTTTAGATGTGGACTACCGCAATCTTACCCTCT
GGTTGATATACGCAGAGATGGAGATGAAGAACCGCCAGGTCAACCATGCC
CGAAACATCTGGGACCGTGTTTTTTTCTTTCTGCCCCGAGTCAAGCAGTT
GTGGTACAAGTACACATACATGGAGGAGCTGTTGGGCAACGTCGCTGGTG
CTCGTCAGGTGTTTGAGCGCTGGATGGAATGGCAGCCTGAGGAGCAGGCC
TGGCACTCGTACATCAACTTGGAGCTGAGGTACAAAGAGGTGGAGCGGGC
CCGCACCATTTATGAACGCTTTGTGCTCGTGCACCCTGCTGTGAAGAACT
GGATCAAGTATGCTCGGTTTGAAGAGCGGCACGCTTCTGTTGCTCATGCG
CGGAAAGTCTACGAGAGGGCCGTGGAGTTTTTCGGGGAGGAGCATATGGA
CCAACACCTCTATGTGGCCTTTGCAAAATTCGAGGAGAATCAGAAAGAAC
TGGAAAGGGTGCGAGTTATCTACAGATATGCCCTGGATAGGATTTCCAAA
CAGGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_d18.b1 MSMg01no510_d18.b1 CHROMAT_FILE:
MSMg01no510_d18.b1 PHD_FILE: MSMg01no510_d18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:45 2005
         (334 letters)



>mm_chr6_50677713_50678446
          Length = 734

 Score =  638 bits (330), Expect = 0.0
 Identities = 333/334 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccaagactgcaatggcccttgctccagatgacagaaatcgcttgcaaggcaagctacag 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 534 cccaagactgcaatggcccttgctccagatgacagaaattgcttgcaaggcaagctacag 475

                                                                       
Query: 61  catccttctaatctcccaactcaggtctatacttttccttctcacccttccatgggtatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 catccttctaatctcccaactcaggtctatacttttccttctcacccttccatgggtatc 415

                                                                       
Query: 121 agtgtagaagtaccaagtgtccacttattagttgagttgcctttaagtagctgaaaaccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 agtgtagaagtaccaagtgtccacttattagttgagttgcctttaagtagctgaaaaccc 355

                                                                       
Query: 181 agacaaatctgctcaaagaccaaagaaagtacagggggttgggagattagaaagtcctga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 agacaaatctgctcaaagaccaaagaaagtacagggggttgggagattagaaagtcctga 295

                                                                       
Query: 241 gaagaaaaaaagtctatagatgtggatccctgtgccatagaagcatcaagcaccttcagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 gaagaaaaaaagtctatagatgtggatccctgtgccatagaagcatcaagcaccttcagg 235

                                             
Query: 301 acagagcattaccctggagtgtgtgataatggcg 334
           ||||||||||||||||||||||||||||||||||
Sbjct: 234 acagagcattaccctggagtgtgtgataatggcg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space:   235625
Effective search space used:   235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)