Query= MSMg01no510_e08.b1 MSMg01no510_e08.b1 CHROMAT_FILE:
MSMg01no510_e08.b1 PHD_FILE: MSMg01no510_e08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:48 2005
(599 letters)
>mm_chr6_99781011_99782009
Length = 999
Score = 563 bits (291), Expect = e-164
Identities = 328/343 (95%), Gaps = 6/343 (1%)
Strand = Plus / Minus
Query: 1 gcctagtcaacctcagggtcccatagaaaacccagagacctgctgtgttctctgcaacct 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gcctagccaacctcagggtcccatagaaaacccagagacctgctgtgttctctgcaacct 295
Query: 61 actggtcctgcagaaaacatctcagtgatctcgctcagactgctgaatcagcttcagtta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 actggtcctgcagaaaacatctcagtgatctcgctcagactgctgaatcagcttcagtta 235
Query: 121 caaaggggcttacccatgcagtcaatcactgattcacacacacacaca----tgcatgca 176
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 234 caaaggggcttacccatgcagtcaatcactgattcacacacacacacacacatgcatgca 175
Query: 177 tacacacacacaattcactgactcacacacacacatgcatgcacacacacatgcatgcac 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 tacacacacacaattcactgactcacacacacacatgcatgcacacacacatgcatgcac 115
Query: 237 acacacaattcactgattcacacacacacacatgcacacatacatgcacgaacacacaca 296
|||||||||||||||||||||||||||| ||| |||||| |||||| | ||||| |||
Sbjct: 114 acacacaattcactgattcacacacacatgcatacacaca--catgcatgcacacataca 57
Query: 297 cacaattcactgattcacacacacacatgcatacacacacaca 339
||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 56 cacaattcactgactcacacacacacatgcatgcacacacaca 14
Score = 271 bits (140), Expect = 1e-76
Identities = 185/210 (88%), Gaps = 20/210 (9%)
Strand = Plus / Minus
Query: 303 tcactgattcacacacacacatgcatacacacacacatgcatgcacacatacacacaatt 362
|||||||||||||||| ||||||||||||||||||| ||| ||||||||||
Sbjct: 209 tcactgattcacacac----------acacacacacatgcatgcatacacacacacaatt 160
Query: 363 cactgactcacacacacacatgcatgcacacacacatgcatgcacacacacaattcactg 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 cactgactcacacacacacatgcatgcacacacacatgcatgcacacacacaattcactg 100
Query: 423 attcacacacaca--ca--catgcacacatgcatgcacgaacacacacacacaattcact 478
||||||||||||| || || ||||||||||||||| ||| ||||||||||||||
Sbjct: 99 attcacacacacatgcataca--cacacatgcatgcac----acatacacacaattcact 46
Query: 479 gattcacacacacacatgcatacacacaca 508
|| |||||||||||||||||| ||||||||
Sbjct: 45 gactcacacacacacatgcatgcacacaca 16
Score = 221 bits (114), Expect = 2e-61
Identities = 178/210 (84%), Gaps = 24/210 (11%)
Strand = Plus / Minus
Query: 362 tcactgactcacacacacacatgcatgcacacaca--catgcatgcacacacacaattca 419
||||||| ||||||||||| |||||||| ||||||| |||||||||||||||
Sbjct: 209 tcactgattcacacacaca--------cacacacatgcatgcatacacacacacaattca 158
Query: 420 ctgattcacacacacaca--catgcacacatgcatgcacgaacacacacacacaattcac 477
|||| ||||||||||||| |||||||||| |||||| | ||||||||||||||||
Sbjct: 157 ctgactcacacacacacatgcatgcacacacacatgcatg----cacacacacaattcac 102
Query: 478 tgattcacacacacacatgcatacacacacatgcatgcacaca--cacacaattcactga 535
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 101 tgatt--cacacacacatgcatacacacacatgcatgcacacatacacacaattcactga 44
Query: 536 ttcatacacacaca--ca--cacacacaca 561
||| ||||||||| || ||||||||||
Sbjct: 43 ctcacacacacacatgcatgcacacacaca 14
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 122
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 3
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space: 582521
Effective search space used: 582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no510_e08.g1 MSMg01no510_e08.g1 CHROMAT_FILE:
MSMg01no510_e08.g1 PHD_FILE: MSMg01no510_e08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:49 2005
(655 letters)
>mm_chr6_99650747_99651801
Length = 1055
Score = 1199 bits (620), Expect = 0.0
Identities = 647/656 (98%), Gaps = 2/656 (0%)
Strand = Plus / Plus
Query: 1 tcccttc-aaatttcctgtctctgatctatccaaaaaactctagtgccaggaaggaatgg 59
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcccttcaaaatttcctgtctctgatctatccaaaaaactctagtgccaggaaggaatgg 260
Query: 60 ggtcgctttcatgggagagacgtttgttatgtaacgctccaatgccgggagagccagtgg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtcgctttcatgggagagacgtttgttatgtaacgctccaatgccgggagagccagtgg 320
Query: 120 acgcgccgctggcgggttctgtccaaactttgcaagaggcaaacatgtttctctcaaaag 179
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 acgcgccgctggcgggttctgtccaaactttgcaagaggcaaacatgtttcgctcaaaag 380
Query: 180 gaccacagaacccctcctaaaacgtgaacgaggagcagacttacaccacaggaaaaggga 239
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 gaccacagaa-ccctcctaaaacgtgaacgaggagcaggcttacaccacaggaaaaggga 439
Query: 240 ttttgtgtttttggtttttaagaaagaacagacttactcaagaaaggcttaggagctgcc 299
||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 440 ttttgtgggtttggtttttaagaaagaacagacttagtcaagaaaggcttaggagctgcc 499
Query: 300 caaccaaccctagatcctggtaaataaatagcctgagatttacatctggaaggtggaagt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 caaccaaccctagatcctggtaaataaatagcctgagatttacatctggaaggtggaagt 559
Query: 360 ctcaaagccagtctgaattatatcaaggaactgcaaacacatttcagaagtataaataca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctcaaagccagtctgaattatatcaaggaactgcaaacacatttcagaagtataaataca 619
Query: 420 gtcatctcatttcctgataccattacagagacaggtaaatagaaacgattacatcccagt 479
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 620 gtcatctcatttcctgataccattacagagacaggtaaatagaagcgattacatcccagt 679
Query: 480 ttctggaaggaatcatttagttatttacaaattaagttttaagtggccggcctacaacag 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttctggaaggaatcatttagttatttacaaattaagttttaagtggccggcctacaacag 739
Query: 540 ctgcggagaagataaactgttagaaagctatatacttttttaaaaagctcttgagtacag 599
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 740 ctgcggagaagataaactgttagaaagctatatactttttaaaaaagctcttgagtacag 799
Query: 600 ctgtattacctgtagaacgctggttggtgtagccctgtgggagagacagcttaatt 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ctgtattacctgtagaacgctggttggtgtagccctgtgggagagacagcttaatt 855
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space: 674025
Effective search space used: 674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
