BAC Information

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BAC

Clone NameMSMg01-510I03
Chromosome6 (Build37)
Map Location 7,484,791 - 7,485,034
singlet/doubletsinglet
Overlap genenone
Upstream geneShfm1, LOC545826, Dlx6as, Dlx5, Acn9, EG667500
Downstream geneTac1, LOC667511, Asns, EG667529, C1galt1, LOC100040661, Col28a1, BC020002, Rpa3, LOC100036521, LOC667028, A430035B10Rik, Glcci1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510I03.T7 (MSMg01no510_i03.b1)MSMg01-510I03.TJ (MSMg01no510_i03.g1)
ACCAG583928AG583929
length741751
length of high quality
(start - end)
412 (327 - 738)242 (79 - 320)
definitionCHROMAT_FILE: MSMg01no510_i03.b1 PHD_FILE: MSMg01no510_i03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:06 2005CHROMAT_FILE: MSMg01no510_i03.g1 PHD_FILE: MSMg01no510_i03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCGAGAAGATCCGC
GGAATTCTTTATTTTCTCCAGACCAAAAGCAGGCTAGCACTTTGAAAAAA
TTCTAGGCATCAAAGTTTATATTGGTTAAAAACTACATTGCCATCATGGT
TGGGTGTAGTTCAGGGGAACCTGTTAACTTCTGTTTTGACTATACTTTCA
CAATATTTTGGTTACATATCTGGGCCATGGTCAGGATCATGAAAAATTCT
GAATGTGTTGTCAAGGTGGATATGACTGATGGTCTGGAAACAAACAAAGT
AGACACAAAATGGAGTACATTTTTTATCTATATGAGAAGTGACCTGAGTG
ACTTCACTGTTGTGTCTGGAGTAGTCTCTTTACATGGAGTCAACCATCAC
CTCTGGCTTTTTACAATCTTTATGCTGCCTCTTCTGCATAGATTTCTGAA
TCTTGAAAGAAGGGGTTTGATGAAAATATCCCACTTAGGGCTGAGTGCTC
CAAAGTCTCTCACACTCTGTACATCTTCCAGGTACAGGTCTCTGTGTTAG
TTCCCATCTACTGGAAGAAGAAGGTTGTCTGATGAGGGCTGATTGTGGCA
GCACACACATAACGTGCACAGGTTTTAACCAGACAAAACTCCCACCCTAC
AAAGGGGAAATGAATACAAATCCCCACCCCTAACCTAGAAGCTCTTTGCA
GTTGATATATGTTGGTAAAGGGAAAGTCAGTTTTCTCCAAT
NTCCAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCTAACAAAGCACCAGAGAA
TCAAACCACACTGGCTGAGAGATAATTCTGTTATTAAATAGAAAAGGACC
CCTAATAATTAGAGTAATAAGACACACATCTATATGTGTGTACAAATATG
TCAATATCAGATATATTTATATATATTCAAATAATGCCTGTTCTTAATAA
GTAATCAATACTAAGAAGCACCATCCTTCTAGGATCATAATATTAATAAT
ATTGAAGAAACATAAGCTTTACTCTTGTTATTATACAGCTTTGATCAGAG
AAATTCATTCCATTAGTATAATCCAAGAATGGTTATTGTTCTTCAGAGAT
GTGTTCTTATTTACAAAACTGTGTGCATAGCCGGGTACAAAGGTAAGTAA
TTGGTAGGTTGTAAAATCTTATTTAAAGTCTTATTTCAATGTTTGACAAT
GAAAAATAGTAGTCTAGTACCTAGCAATTTAGAGAAAATCCTTTTTGTTT
CACCTTGTATCCAACATGCTGTGGCTGTTCCCTTTTACAGTTTAGGGAAA
CCAGCGGGGCAATCTGATGCTTCAGTGAACAGATTCTATACCCAGCAAGG
AAAAAGGTCTGTTGCTACCTCCCACTCATTTGCCCTGTATATACGGTAAA
TCATTGTGAGGGGTATATAATAAATTATTCATAAGTGTGTTCCCATTAAA
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_i03.g1 MSMg01no510_i03.g1 CHROMAT_FILE:
MSMg01no510_i03.g1 PHD_FILE: MSMg01no510_i03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:07 2005
         (242 letters)



>mm_chr6_7484591_7485234
          Length = 644

 Score =  453 bits (234), Expect = e-132
 Identities = 241/244 (98%), Gaps = 2/244 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccctaacaaagcaccagagaatcaaaccacactggctgagagataattctgttattaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tccctaacaaagcaccagagaatcaaaccacactggctgagagataattctgttattaaa 385

                                                                       
Query: 61  tagaaaaggacccctaataattagagtaataagacacacatctata--tgtgtgtacaaa 118
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 384 tagaaaaggacccctaataattagagtaataagacacacatctatatgtgtgtgtacaaa 325

                                                                       
Query: 119 tatgtcaatatcagatatatttatatatattcaaataatgcctgttcttaataagtaatc 178
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 324 tatgtcaatatcagatatatttatgtatattcaaataatgcctgttcttaataagtaatc 265

                                                                       
Query: 179 aatactaagaagcaccatccttctaggatcataatattaataatattgaagaaacataag 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aatactaagaagcaccatccttctaggatcataatattaataatattgaagaaacataag 205

               
Query: 239 cttt 242
           ||||
Sbjct: 204 cttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 644
Length adjustment: 9
Effective length of query: 233
Effective length of database: 635
Effective search space:   147955
Effective search space used:   147955
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)