BAC Information

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BAC

Clone NameMSMg01-511K08
Chromosome6 (Build37)
Map Location 110,072,266 - 110,072,486
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC639110, LOC100043720
Downstream geneGrm7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511K08.T7 (MSMg01no511_k08.b1)MSMg01-511K08.TJ (MSMg01no511_k08.g1)
ACCAG584792AG584793
length758740
length of high quality
(start - end)
244 (51 - 294)346 (75 - 420)
definitionCHROMAT_FILE: MSMg01no511_k08.b1 PHD_FILE: MSMg01no511_k08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:34 2005CHROMAT_FILE: MSMg01no511_k08.g1 PHD_FILE: MSMg01no511_k08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATCATTTGCGGCCGCTATTCGACTCTTTATTTCCAGAGGATCCGCGGAA
TTCTTTCTTCTCCCCTTCACTTTCCTTCCTTCTTAGGAACATGGTCTGGG
GCTTTCTCATCTTTTTGCTATACAAGCTTTTTCTTTCCTATTCAACTGGA
TTTTGTTATTTGCTTGTTTATTCAAGTAACTGGTGCTTTTAAATTTAATT
TATTTGTCTCATTTGCAAATTATTTTATTTATTTATTTATTTATTTACCC
ACTTACTTATTTATTTATTTATTCATTTATTTATTTTTGCTTTGTAAGCC
CTGACTTTTAAATTTTCTATAAAGCCCTACAATATGTATTGCAAAAAAAA
AATACGCTCCCTTTATATTTGTTCTCTCTTATTAACTTTCTATTGCGGTG
ACTAAACACCATGATCAAGGGGAATTATAAAACAAAGCATTTAATTTAGG
GGATCGTAGGTTTCCTCGCTTTTACTTTGCCCTTGTTTCTCTCGTTTTGT
TTCGCTTTGCCAATTTTTGTCTCCCCCTTTTTTTCCTTCTTTCTTCCCTC
GCTCTTAATTTTTTTATACCTCTTCTTCCTCTCTCCTTTCTTTTTTCTTT
TTTTTTTTTTCCCCTCCCCCTTTTTCTTTTTCTTCCTTTTTTATCACCCC
TTTCCCCCTTTCCTATTTCCCCCTTTTTTTCCCCCCCCCTTCTTTTTCCC
CTTACATTACTTTTCTCCCCCTTATCTTTTTATTACTTTCTCCCTCATCT
CTTCTTCN
CAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTAGCTCTGTATGCAGTTTTA
AATTGGGTTATTGGGTTTGTTGATGTCTAACTTCTTTAGTTCTTTATATA
TTTTAGATATTAGCCTTTTGTCAGATGTAGGGTTGTTGAAGATCCTTTCC
CAATCTGTAGGCTGCCATTTTGTCCTATTGACAGTTATATCCACAAGATA
GAGACCCAGGATAAGGGAGGATCTCAAAGCTGTGACTGAAAACACTGGAG
ATATGGAACCAGAAGTGTCTTCCTCCTCTTGCTAGGTAGGAGCAATATGA
GCACAAACCCACCCACAAAACTTTGGACTTAATTTTTTTTTCTGTCTACA
AGAAATGCAGGAATGAAGGATATAGTAGAGCCTGAGGGAATGGTCAATCA
ATTTTTGGCCCAACTTGAGATTCATCCATGGACAAAAAGTAATCCCTGAC
ACTATTAATAATACTCTGTTATGTTTGCAGACAGGAATCTAGCATAGATG
TCCTCTGAGAGGCTCCTCCCAGCATCTAACTCAGACAGGTGCAGACATTC
ACATCCTAAGAGTGGATTGACCTTCTGCGCCCTCTTTGATAAATTTTAAG
AATGATTGACGTCCCTTTAGGGGATAGGATTGCCTCTTGTAGATTTATTG
AGTCAACCATTATAGGGCCCCTGACTCTCCAAGATTGGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_k08.b1 MSMg01no511_k08.b1 CHROMAT_FILE:
MSMg01no511_k08.b1 PHD_FILE: MSMg01no511_k08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:34 2005
         (244 letters)



>mm_chr6_110072112_110072757
          Length = 646

 Score =  354 bits (183), Expect = e-102
 Identities = 213/225 (94%), Gaps = 6/225 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctttcttctccc-cttcactttccttccttcttaggaa-catggtctggggctttctc 58
           ||||||||||||||  |||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 375 ttctttcttctcccagttcactttccttccttcttaggaagcatgatctggggctttctc 316

                                                                       
Query: 59  atctttttgctatacaagctttttctttcctattcaactggattttgttatttgcttgtt 118
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 315 atctttttgctatacaagctttttctttcctattcaactggattttgttatttgtttgtt 256

                                                                       
Query: 119 tattcaagtaactggtgcttttaaatttaatttatttgtctcatttgcaaattattttat 178
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tattcatgtaactggtgcttttaaatttaatttatttgtctcatttgcaaattattttat 196

                                                        
Query: 179 ttatttatttatttatttacccacttacttatttatttatttatt 223
           ||||||||||||||||||    | ||| |||||||||||||||||
Sbjct: 195 ttatttatttatttattt----atttatttatttatttatttatt 155


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 646
Length adjustment: 9
Effective length of query: 235
Effective length of database: 637
Effective search space:   149695
Effective search space used:   149695
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)