Query= MSMg01no512_g04.b1 MSMg01no512_g04.b1 CHROMAT_FILE:
MSMg01no512_g04.b1 PHD_FILE: MSMg01no512_g04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:31 2005
(582 letters)
>mm_chr6_19685511_19686492
Length = 982
Score = 1038 bits (537), Expect = 0.0
Identities = 564/579 (97%), Gaps = 11/579 (1%)
Strand = Plus / Plus
Query: 5 gaattctttgttcagctctgagcccca-tttttaatggggttattagattttctggagtc 63
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctttgttcagctctgagccccattttttaatggggttattagattttctggagtc 263
Query: 64 catatcctttagaaagtatcttatactttttatgtccatcagaacatcccttcttaccat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 catatcctttagaaagtatcttatactttttatgtccatcagaacatcccttcttaccat 323
Query: 124 atcttaggattctcatacacactcaaaaatctctaccgattccgttctatcaatacgcag 183
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 324 atcttaggattctcatacacactcaaaaatctctaccgattccattctatcaatacgcag 383
Query: 184 tggatatttgctttttgtttctattggatttcttatctctttcatatcaagcctgagcca 243
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 384 tggatatttgctttttgtttctattggatttcttatctctttcacatcaagcctgagcca 443
Query: 244 cagggaaagtaccagtgtggtagtaaatttcaagtcctgaaggtattcactaaggaaatt 303
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cagagaaagtaccagtgtggtagtaaatttcaagtcctgaaggtattcactaaggaaatt 503
Query: 304 tcagataggaaagttttggctcaggaaagaaatgagaggtaaagctggaagaaggaatcc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tcagataggaaagttttggctcaggaaagaaatgagaggtaaagctggaagaaggaatcc 563
Query: 364 tagcatagagtccaagccctgattgtacttgatagtctattgttaaaccaagatcttttc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tagcatagagtccaagccctgattgtacttgatagtctattgttaaaccaagatcttttc 623
Query: 424 caaatgatggagcttcaaattgtaaagtaacaggataacttaaccatgggacaataaaag 483
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 caaatgatggggcttcaaattgtaaagtaacaggataacttaaccatgggacaataaaag 683
Query: 484 gtcttaacattcattgtcatgagaaagagtcatgagatcaaccatggcaccttgagaaat 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gtcttaacattcattgtcatgagaaagagtcatgagatcaaccatggcaccttgagaaat 743
Query: 544 attgaaactaagtgatatgtgaggcaatcaataagacta 582
||||| ||||||||||||||||||||||||
Sbjct: 744 attga----------tatgtgaggcaatcaataagacta 772
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space: 555984
Effective search space used: 555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no512_g04.g1 MSMg01no512_g04.g1 CHROMAT_FILE:
MSMg01no512_g04.g1 PHD_FILE: MSMg01no512_g04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:31 2005
(551 letters)
>mm_chr6_19728799_19729749
Length = 951
Score = 920 bits (476), Expect = 0.0
Identities = 497/504 (98%)
Strand = Plus / Minus
Query: 1 tgttttaaaagtctgctgggttttttgatatcttacctatttaggaggtacaatatcatg 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgttttaaaagtctgctggtttttttgatatcttacctatttaggaggtacaatatcatg 445
Query: 61 ttttggtttatttgagcattttgtactcaaaactctaggcaattggaaaatccatctcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttttggtttatttgagcattttgtactcaaaactctaggcaattggaaaatccatctcca 385
Query: 121 taagtgttggacattttattgtaggaatttgttgaaaccccttgctttccacttcattaa 180
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 384 taagtgttgaacattttattgtaggactttgttgaaaccccttgctttccacttcattaa 325
Query: 181 agtatttagtactatttgctttttgttcataacatacatattaatatagtcatggtgaat 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 324 agtatttagtactatttgctttttgttcataacatacatattaatagagtcatggtgaat 265
Query: 241 tcataagaaattgtaccaaatcctctagcctttcttatcatcaagtttctacaaagtcat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 264 tcataagaaattgtaccaaatcctctagcctttcttatcatcaagtttctacaaaatcat 205
Query: 301 aaagaattattatatttttaaggttaatattatttgagtttttgaaatttattttatttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 aaagaattattatatttttaaggttaatattatttgagtttttgaaatttattttatttt 145
Query: 361 tcatatatgctcaattcaagtgtttcttaatctagcaggctctcccaaacataccaatac 420
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 144 tcatatatgctcaattcaagtttttcttaatctagcaggctctcccaaacataccaatac 85
Query: 421 atggatccaaataatgtattaccttgaagagaaaaaaaattgttccgtgtttatattttc 480
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 84 atggatccaaataatgtattaccttaaagagaaaaaaaattgttccgtgtttatattttc 25
Query: 481 tacttctctcttgactgtgagaaa 504
||||||||||||||||||||||||
Sbjct: 24 tacttctctcttgactgtgagaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space: 509081
Effective search space used: 509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
