BAC Information

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BAC

Clone NameMSMg01-513E20
Chromosome6 (Build37)
Map Location 19,011,341 - 19,151,566
singlet/doubletdoublet
Overlap geneLOC626180
Upstream geneAsz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneEif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-513E20.T7 (MSMg01no513_e20.b1)MSMg01-513E20.TJ (MSMg01no513_e20.g1)
ACCAG586054AG586055
length747740
length of high quality
(start - end)		594 (42 - 635)607 (72 - 678)
definitionCHROMAT_FILE: MSMg01no513_e20.b1 PHD_FILE: MSMg01no513_e20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:45 2005CHROMAT_FILE: MSMg01no513_e20.g1 PHD_FILE: MSMg01no513_e20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,011,341 - 19,011,933)(19,150,959 - 19,151,566)
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAGATATGGAAGATAGTTATTTCTAATTGTTTAGTAGGAAAGTTTTATCA
GAATTTCTGACTTTATAATAAAAACACAAGAAAGGACATGACATTTGCAA
GGATAAGAAAAAAGAAAAGTTTTTCTGCACATTGCTATTAGTTTATCATT
GCAGACAATTTGTATCATTGAAAAGTTGTCTTCAGTACACTTGCCCATTA
TTGTAGTAATTCTCATTATGAGCTGAAATCTTCCTTTGAAACTTTAGGAT
TGACAGTTAAAACACGAGATGAGCATAATATGTGTTAAACATGAATAGGA
GCTAAATTATTTATTTTTATCTGAAATTCATATTGAACTGGATACTTTGT
ATTTTATCTGCTAAAACTAGCAACTCCACTTTTTATATGCAATGGCTAAA
GACATGATAGAGAAGCAGAGGGGAGAGATTTTCTTTCCTCATGCTAACAA
TGAATTCTTCCTTCCATCTTATTATAACATATCTAAGGACAAATGTTTGT
ATCAGATCCTATATGTAAGAAAATAATATTAATTAATAATATTATATAAA
TATTATTTATAAATATTATTTATATCCTGAAAAGTAAAGATATCACTAAA
CTGTTCTAGGATAGAAATTAACTTTCACAGAACCTCATAAAAGTAGCCCT
TAGTTTCATGGTAGAATGGAGTGTGAAGCACAAGTACCGAAAGAAAA

GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAGGACTGTCAAATGGAATTATTAATATT
TAGGGCAGTCATATATTATGTAAACTTTCTAAAGAAAACATGCAAACTGT
TAGAAAACAATTTTTTATGATTTTGGGAATGGGATACAGACATTTTCTTA
AGCTTATTAGGAAAAATATTTCTAGTTGATTAATTAGTATTCAGACTCTC
ATTGCTATGAGACAAGAAAAACTTTATGTTGTAACATCTTAATAAATTAT
CCAAAAGCTAAAACATTCTAAATTTAAATGTCCAGAATGATTGAAATTTT
ACAGCCATAGATTTTATTAAAGTATTTCAAAGTAAAAAAGAAAAGAAAGC
TTTGACAATTATTCATCTTTGAAGGACAATCATGAAAATTTTGCTCTGTA
AATATGGTTTTGCTCAAGATGTTTTATATTTTCATTGCATATGCCACATC
TATACTGCATCCCCTACTCCTAAGGCCCAGGGAACATCAAGGAACAGGGG
CCAAAAGGATTGGAAAGGCCAGAGGGGCTGGGTGGCTGTATACAATGGAA
TATTCTGCCTGGGAAATAACACTTATGATATATTAACAATATGATGGTCA
GAACAAGAGCTGCATCAAAACAAGATCTCACAATGTCCCAATTATAGATG
AAGTGCTACAGGCCATTGATAGTTGCTGAGGGAAGGAGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no513_e20.b1 MSMg01no513_e20.b1 CHROMAT_FILE:
MSMg01no513_e20.b1 PHD_FILE: MSMg01no513_e20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:45 2005
         (594 letters)



>mm_chr6_19011140_19012133
          Length = 994

 Score = 1123 bits (581), Expect = 0.0
 Identities = 589/593 (99%), Gaps = 3/593 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagatatggaagatagttatttctaattgtttagtaggaaagttttatcagaatt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaattcagatatggaagatagttatttctaattgtttagtaggaaagttttatcagaatt 261

                                                                       
Query: 65  tctgactttataataaaaacacaagaaaggacatgacatttgcaaggataagaaaaaaga 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 262 tctgactttataataaaaacacaagaaaggacatgacatttgcaaggataagtaaaaaga 321

                                                                       
Query: 125 aaagtttttctgcacattgctatt---agtttatcattgcagacaatttgtatcattgaa 181
           ||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||
Sbjct: 322 aaagtttttctgcacattgctattcttagtttatcattgcagacaatttgtatcattgaa 381

                                                                       
Query: 182 aagttgtcttcagtacacttgcccattattgtagtaattctcattatgagctgaaatctt 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aagttgtcttcagtacacttgcccattattgtagtaattctcattatgagctgaaatctt 441

                                                                       
Query: 242 cctttgaaactttaggattgacagttaaaacacgagatgagcataatatgtgttaaacat 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cctttgaaactttaggattgacagttaaaacacgagatgagcataatatgtgttaaacat 501

                                                                       
Query: 302 gaataggagctaaattatttatttttatctgaaattcatattgaactggatactttgtat 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gaataggagctaaattatttatttttatctgaaattcatattgaactggatactttgtat 561

                                                                       
Query: 362 tttatctgctaaaactagcaactccactttttatatgcaatggctaaagacatgatagag 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tttatctgctaaaactagcaactccactttttatatgcaatggctaaagacatgatagag 621

                                                                       
Query: 422 aagcagaggggagagattttctttcctcatgctaacaatgaattcttccttccatcttat 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aagcagaggggagagattttctttcctcatgctaacaatgaattcttccttccatcttat 681

                                                                       
Query: 482 tataacatatctaaggacaaatgtttgtatcagatcctatatgtaagaaaataatattaa 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tataacatatctaaggacaaatgtttgtatcagatcctatatgtaagaaaataatattaa 741

                                                                
Query: 542 ttaataatattatataaatattatttataaatattatttatatcctgaaaagt 594
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ttaataatattatataaatattatttataaatattatttatatcctgaaaagt 794


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space:   574656
Effective search space used:   574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no513_e20.g1 MSMg01no513_e20.g1 CHROMAT_FILE:
MSMg01no513_e20.g1 PHD_FILE: MSMg01no513_e20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:45 2005
         (607 letters)



>mm_chr6_19150942_19151949
          Length = 1008

 Score = 1129 bits (584), Expect = 0.0
 Identities = 602/608 (99%), Gaps = 1/608 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggactgtcaaatggaattattaatatttagggcagtcatatattatgtaaactttcta 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 625 aaggactgtcaaatggaattattaatagttagggcagtcatatattatgtaaactttcta 566

                                                                       
Query: 61  aagaaaacatgcaaactgttagaaaacaattttttatga-ttttgggaatgggatacaga 119
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 565 aagaaaacatgcaaactgttagaaaacaattttttatgatttttgggaatgggatacaga 506

                                                                       
Query: 120 cattttcttaagcttattaggaaaaatatttctagttgattaattagtattcagactctc 179
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 505 cattttcttaagcttattaggaaaaataattctagttgattaattagtattcagactctc 446

                                                                       
Query: 180 attgctatgagacaagaaaaactttatgttgtaacatcttaataaattatccaaaagcta 239
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 attgctatgaaacaagaaaaactttatgttgtaacatcttaataaattatccaaaagcta 386

                                                                       
Query: 240 aaacattctaaatttaaatgtccagaatgattgaaattttacagccatagattttattaa 299
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaacattctaaatttaaatttccagaatgattgaaattttacagccatagattttattaa 326

                                                                       
Query: 300 agtatttcaaagtaaaaaagaaaagaaagctttgacaattattcatctttgaaggacaat 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agtatttcaaagtaaaaaagaaaagaaagctttgacaattattcatctttgaaggacaat 266

                                                                       
Query: 360 catgaaaattttgctctgtaaatatggttttgctcaagatgttttatattttcattgcat 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 catgaaaattttgctctgtaaatatggttttgctcaagatgttttatattttcattgcat 206

                                                                       
Query: 420 atgccacatctatactgcatcccctactcctaaggcccagggaacatcaaggaacagggg 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 atgccacatctatactgcatcccctactcctaaggcccagggaacatcaaggaacagggg 146

                                                                       
Query: 480 ccaaaaggattggaaaggccagaggggctgggtggctgtatacaatggaatattctgcct 539
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 ccaaaaagattggaaaggccagaggggctgggtggctgtatacaatggaatattctgcct 86

                                                                       
Query: 540 gggaaataacacttatgatatattaacaatatgatggtcagaacaagagctgcatcaaaa 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85  gggaaataacacttatgatatattaacaatatgatggtcagaacaagagctgcatcaaaa 26

                   
Query: 600 caagatct 607
           ||||||||
Sbjct: 25  caagatct 18


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1008
Length adjustment: 10
Effective length of query: 597
Effective length of database: 998
Effective search space:   595806
Effective search space used:   595806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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