Query= MSMg01no513_j21.b1 MSMg01no513_j21.b1 CHROMAT_FILE:
MSMg01no513_j21.b1 PHD_FILE: MSMg01no513_j21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:10 2005
(641 letters)
>mm_chr6_94268334_94269374
Length = 1041
Score = 1069 bits (553), Expect = 0.0
Identities = 627/687 (91%), Gaps = 57/687 (8%)
Strand = Plus / Minus
Query: 5 gaattctccaagtgtctcaaatgcaaaccttttggttcaagggcctttatttacataccc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 gaattctccaagtgtctcaaatgcaaaccttttggttcaagggcctttatttacataccc 825
Query: 65 tgttgtttagactcagggtatgtatgtcatacagctgtcaaacaaagcagcatgt--aaa 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 824 tgttgtttagactcagggtatgtatgtcatacagctgtcaaacaaagcagcatgtaaaaa 765
Query: 123 aaaaaaatctaggacaactttgcataagttagttaaaggccatagcctgaaggactttct 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 aaaaaaatctaggacaactttgcataagttagttaaaggccatagcctgaaggactttct 705
Query: 183 ttaggcatttggcaagaaaactaaaacaagaaaacttgcaattggttgcaggtgttcgaa 242
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 704 ttaggcatttggcaagaaaactaaaacaagaaaacttgcaattggttgcaggtgtttgaa 645
Query: 243 caaatttcctgagatgc---------------------------------cggtgaaggt 269
||||||||||||||||| ||||||||||
Sbjct: 644 caaatttcctgagatgccggtgagatgccggtgagatgccggtgagatgtcggtgaaggt 585
Query: 270 gtctgctgccactgctgctgcttcatttcactgattgactaaattcagcagctcacccct 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 gtctgctgccactgctgctgcttcatttcactgattgactaaattcagcagctcacccct 525
Query: 330 gtttgtaggtgttgggaaaataatctcagtgtcccacaaaagaacgcataaagaaagtaa 389
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 524 gtttgtaggtgttgggaaaataatctcagtgtcccacaaaagaacacataaagaaagtaa 465
Query: 390 tgtgacaagatg------------------gaaaaaaaaaaaaaaaggtacaccggaatc 431
|||||||||||| | ||||||||||||| |||||||||||
Sbjct: 464 tgtgacaagatggtttctttttttttttttg----aaaaaaaaaaaggcacaccggaatc 409
Query: 432 caaaccaggctagccaaagctctcagacaaaatgttctcttttatctctggcataggtgg 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 caaaccaggctagccaaagctctcagacaaaatgttctcttttatctctggcataggtgg 349
Query: 492 tgactgcatctcatcccactggtgagagagagcttaatgtcacagtctaacatgattggc 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tgactgcatctcatcccactggtgagagagagcttaatgtcacagtctaacatgattggc 289
Query: 552 taatggcacaaggagaagggagcagttcagggaatatgggacctcaaaaagctgattgcc 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 taatggcacaaggagaagggagcagttcagggaatatgggacctcaaaaagctgattgcc 229
Query: 612 tttgatagaaaacaaacaaacaaaaaa 638
|||||||||||||||||||||||||||
Sbjct: 228 tttgatagaaaacaaacaaacaaaaaa 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space: 650561
Effective search space used: 650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no513_j21.g1 MSMg01no513_j21.g1 CHROMAT_FILE:
MSMg01no513_j21.g1 PHD_FILE: MSMg01no513_j21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:10 2005
(625 letters)
>mm_chr6_94112815_94113840
Length = 1026
Score = 1098 bits (568), Expect = 0.0
Identities = 605/626 (96%), Gaps = 16/626 (2%)
Strand = Plus / Plus
Query: 1 agtagccacttcttgccccttcgatgattacaacagctgtgcttgcggcccctgtacagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtagccacttcttgccccttcgatgattacaacagctgtgcttgcggcccctgtacagc 260
Query: 61 atggggattcacttcctgagccacagatggg-cggggcttctgatcacagtggatcaatc 119
||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 261 atggggactcacttcctgagccacagatggggcggggcttctgaccacagtggatcaatc 320
Query: 120 tgagtccatctctttcaaatacacaataaagacaaagatcccagccttggtctgaagtgt 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagtccatctctttcaaatacacaataaagacaaagatcccagccttggtctgaagtgt 380
Query: 180 atgctggaaatgtgggcagccgggaaaagaacggagagtacaagaagcaaggaatgacag 239
||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 381 atgctggaa--gt-------------aagaacggagagtacaagaagcaaggaatgacag 425
Query: 240 atccagaaaactctaccagacggcattgcatccgaggcatgaagacactgggagtatctc 299
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 426 atccagaaaactctaccagacggcattgcatccgaggcatgaacacactgggagtatctc 485
Query: 300 cccttccccaaggtgccctatgccctgtgccctcaagttacacactttccttttacattt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cccttccccaaggtgccctatgccctgtgccctcaagttacacactttccttttacattt 545
Query: 360 gctcaagagcatgacagaggcacacacgaaagcatttcctccctagccaaagcaatcatc 419
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 546 gctcaagagcatgacagaggcacacacgaaagcatttcctccctagccaatgcaatcatc 605
Query: 420 atcagacaagaccgagacagctgaggccacagaaagaaaagtgcaaacaagccagggtgg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 atcagacaagaccgagacagctgaggccacagaaagaaaagtgcaaacaagccagggtgg 665
Query: 480 tccacggaaagaggaggaaccatgagaatggagacaaggaagctctgagaaagcaatgaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tccacggaaagaggaggaaccatgagaatggagacaaggaagctctgagaaagcaatgaa 725
Query: 540 ttaagtttctgttctccctcagcaaacgctgaggagagagctcgctgtctgagttggctg 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ttaagtttctgttctccctcagcaaacgctgaggagagagctcgctgtctgagttggctg 785
Query: 600 ctgatagcagagctgtctttacaatg 625
||||||||||||||||||||||||||
Sbjct: 786 ctgatagcagagctgtctttacaatg 811
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1026
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1016
Effective search space: 624840
Effective search space used: 624840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
