Query= MSMg01no513_m23.b1 MSMg01no513_m23.b1 CHROMAT_FILE:
MSMg01no513_m23.b1 PHD_FILE: MSMg01no513_m23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:27 2005
(580 letters)
>mm_chr6_106444417_106445396
Length = 980
Score = 1077 bits (557), Expect = 0.0
Identities = 572/577 (99%), Gaps = 2/577 (0%)
Strand = Plus / Minus
Query: 5 gaattc-tttagtattgatcataaattcaggggtttttggttgacaatttgcaattcaat 63
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 gaattcatttagtattgatcataaattcaggggtttttggttgacaatttgcaattcaat 721
Query: 64 aacctacaaggagaaagccagaggcaatcactttcaatattttaactttatgatagagta 123
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 720 aacctacaaggagaaagccagagacaatcactttcaatattttaactttatgatagagta 661
Query: 124 taggcattcaaaagagtaaatctcacataaagacatatatgtagatatttactttcctaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 taggcattcaaaagagtaaatctcacataaagacatatatgtagatatttactttcctaa 601
Query: 184 catgtaaataaatacaaggattaaagagagaaaagaatttgaaaaccaatacagttatat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 catgtaaataaatacaaggattaaagagagaaaagaatttgaaaaccaatacagttatat 541
Query: 244 ttgttgttacctattctgtggtatttttccacgtagaagtctaattggggaaaacagtta 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ttgttgttacctattctgtggtatttttccacgtagaagtctaattggggaaaacagtta 481
Query: 304 aaaatatttaactataagtgtgtaaaacacaggcacatcaaacagaaccaggctgaatta 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 aaaatatttaactataagtgtgtaaaacacaggcacatcaaacagaaccaggctgaatta 421
Query: 364 cttttgcaaatcaattgtcttggttctattgagcaaaacaaaatatgtgcaagccaatct 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 cttttgcaaatcaattgtcttggttctattgagcaaaacaaaatatgtgcaagccaatct 361
Query: 424 ctagtcagtctcaaggaacatagacaaaaggccacactagacaagtactctttaagctca 483
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ctagtcagtttcaaggaagatagacaaaaggccacactagacaagtactctttaagctca 301
Query: 484 tatgaagtcatgtgagggacatgcatcaacattcttatggacttccttatttctcaaatg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tatgaagtcatgtgagggacatgcatcaacattcttatggacttccttatttctcaaatg 241
Query: 544 atctttctatgctgattttttttttttttttggtcat 580
||||||||||||||| |||||||||||||||||||||
Sbjct: 240 atctttctatgctga-tttttttttttttttggtcat 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space: 552900
Effective search space used: 552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no513_m23.g1 MSMg01no513_m23.g1 CHROMAT_FILE:
MSMg01no513_m23.g1 PHD_FILE: MSMg01no513_m23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:27 2005
(608 letters)
>mm_chr6_106292462_106293468
Length = 1007
Score = 1114 bits (576), Expect = 0.0
Identities = 600/608 (98%), Gaps = 1/608 (0%)
Strand = Plus / Plus
Query: 1 ttttcatcaaaatagatgtgccaaacatttactaaattctccatactcgtaatgagttga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttcatcaaaatagatgtgccaaacatttactaaattctccatactcgtaatgagttga 260
Query: 61 cccttgacaaataatctgcatttgttttgaaaatatctgtgcaattgttgaaaatttgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccttgacaaataatctgcatttgttttgaaaatatctgtgcaattgttgaaaatttgaa 320
Query: 121 gcataaatatatggatcctaaaatatacaattttaatgcataagcatttaaaacttcatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcataaatatatggatcctaaaatatacaattttaatgcataagcatttaaaacttcatg 380
Query: 181 actgtatgcttttattctgttcttttgtcttctttgacggcgcctgtattctgtgattaa 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 actgtatgcttttattctgttcttttgtcttctttgacggtgcctgtattctgtgattaa 440
Query: 241 attactcattgaagtgattttacatatgtaatcaggagaaaagagaatggggacaaaata 300
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttctcattgaagttattttacatatgtaatcaggagaaaagagaatggggacaaaata 500
Query: 301 atatataatattgttgaaactctacatttttatgcagacatgtgtgtttatgagcaatta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atatataatattgttgaaactctacatttttatgcagacatgtgtgtttatgagcaatta 560
Query: 361 tggctctttccccatttacaatcagtctaaaataatcgacctactctgtggtcattactt 420
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 561 tggctctttccccatttacaatcagtctaaaatactcgacctactctgtggtcattactt 620
Query: 421 tagtgcaaactaagacaatgtgggactatgatttcccagcgatcctaaagttagtcctta 480
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 621 tagagcaaactaagacaatgtgggactatgatttcccagagatcctaaagttagtcctta 680
Query: 481 tccaaatctttttacatcaacatcatatgtggtctccagaagaaatgcaattctattcag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tccaaatctttttacatcaacatcatatgtggtctccagaagaaatgcaattctattcag 740
Query: 541 tcatcttgtcccctttattttccttatgtcttaaccctttacctgaagcttcattttttt 600
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 741 tcatcttgtcccctttattttccttatgtctcaaccctttacctgaagcttcatttttt- 799
Query: 601 gatgtctg 608
||||||||
Sbjct: 800 gatgtctg 807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1007
Length adjustment: 10
Effective length of query: 598
Effective length of database: 997
Effective search space: 596206
Effective search space used: 596206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
