Query= MSMg01no514_f07.b1 MSMg01no514_f07.b1 CHROMAT_FILE:
MSMg01no514_f07.b1 PHD_FILE: MSMg01no514_f07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:11 2005
(583 letters)
>mm_chr6_113263596_113264578
Length = 983
Score = 1112 bits (575), Expect = 0.0
Identities = 581/583 (99%)
Strand = Plus / Plus
Query: 1 atgtggaaaaggctaggggcagcgaatgggtgacactctgtcgctccctggtgatatgac 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 atgtggaaaaggctaggggcagcgaatgggtgacactctatcgctccctggtgatatgac 260
Query: 61 ctatctgtgataggttgttaacattttcctcaaagcttcaattcatctaaaatcacaccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctatctgtgataggttgttaacattttcctcaaagcttcaattcatctaaaatcacaccc 320
Query: 121 tcagtcttctgtcactgtggataaataaatgataataaagatgataaggacactaatctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcagtcttctgtcactgtggataaataaatgataataaagatgataaggacactaatctg 380
Query: 181 ttagctattaccagaatagctgtaccttggcctagtgccttgcccataatgaatgctcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttagctattaccagaatagctgtaccttggcctagtgccttgcccataatgaatgctcag 440
Query: 241 tcagttgtagctattatctttcaaggctattcagagaacaaacaggatatatagaatttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcagttgtagctattatctttcaaggctattcagagaacaaacaggatatatagaatttg 500
Query: 301 agagactgctagcatcttctgagagaacatccatgtgtctttggtacttatcatctttgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agagactgctagcatcttctgagagaacatccatgtgtctttggtacttatcatctttgc 560
Query: 361 taaaggcctgtattcatttgccagtgatgtccaaggaattgccttcctctgacagtacaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaaggcctgtattcatttgccagtgatgtccaaggaattgccttcctctgacagtacaa 620
Query: 421 tccccccatacattcacagggagacctccctgctccagcattgccccatttaggggtctg 480
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tccccccatacgttcacagggagacctccctgctccagcattgccccatttaggggtctg 680
Query: 481 gctgagcctctatacttcagggaagaccgtatcatatgatagccacagcatgagtactag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gctgagcctctatacttcagggaagaccgtatcatatgatagccacagcatgagtactag 740
Query: 541 agatgtgggcctgtttgttttcatgaccaggttcttgggcact 583
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agatgtgggcctgtttgttttcatgaccaggttcttgggcact 783
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space: 557529
Effective search space used: 557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no514_f07.g1 MSMg01no514_f07.g1 CHROMAT_FILE:
MSMg01no514_f07.g1 PHD_FILE: MSMg01no514_f07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:11 2005
(548 letters)
>mm_chr6_113453800_113454746
Length = 947
Score = 627 bits (324), Expect = 0.0
Identities = 431/492 (87%), Gaps = 50/492 (10%)
Strand = Plus / Minus
Query: 1 ctgatcctcctgcctcaatctcctaaatgctgggaatttatgcctttatgtgcaaaggaa 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 489 ctgatcctcctgcctcaatctcctaagtgctgggaatttatgcctttatgtgcaaaggaa 430
Query: 61 gcagtatggtaatgactgtgaa-----gggggt-----tggggggagaactcacaggtaa 110
|||||||||||||||||||||| |||||| || |||||||||||||||||||
Sbjct: 429 gcagtatggtaatgactgtgaatgagcgggggtgggggtgtggggagaactcacaggtaa 370
Query: 111 gatgaccagttttgggatgtttctttgttcgaatgcagacaatcagtccatactgtcata 170
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 369 gatgaccagttttgggatgtttctttgtttgaatgcagacaatcagtccat-ctgtcata 311
Query: 171 ctggg-tttttttg--------------g------gtttt------ttttttttttttgg 203
||||| |||||||| | ||||| |||||||||||||
Sbjct: 310 ctgggttttttttgtttgttttttttttgttttttgtttttttttgttttttttttttgt 251
Query: 204 ttttttg--------agacagggtttctctgtgtagccctggctgtcctgtaactca-ct 254
||||||| ||||| ||||||||||||||||||||||||||||| |||||| ||
Sbjct: 250 ttttttggtttttcaagacaaggtttctctgtgtagccctggctgtcctggaactcacct 191
Query: 255 gtgtagaccaggctggcctcgaactcagaaatccacctgtctctgcctcccaagtgctgg 314
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 -tgtagaccaggctggcctcgaactcagaaatccacctgtctctgcctcccaagtgctgg 132
Query: 315 gattaaaggcatgcgccactactgcccggctagtccatactgtttttacagttcacatga 374
|||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 gattaaaggcgtgtgccaccactgcccggctagtccatactgtttttacagttcacatga 72
Query: 375 ccaacattttagtgaataacaatccccaggaaatgtctcctcgac-atttgtggtgggca 433
||||||| |||||||||||||||||||||||||||||||||| || |||| |||||||||
Sbjct: 71 ccaacatcttagtgaataacaatccccaggaaatgtctcctc-accatttctggtgggca 13
Query: 434 cgggcattcttt 445
||||||||||||
Sbjct: 12 cgggcattcttt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 947
Length adjustment: 10
Effective length of query: 538
Effective length of database: 937
Effective search space: 504106
Effective search space used: 504106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
