BAC Information

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BAC

Clone NameMSMg01-514G21
Chromosome6 (Build37)
Map Location 138,408,959 - 138,512,280
singlet/doubletdoublet
Overlap geneLmo3
Upstream genePtpro, Eps8, Strap, Dera, 9830102E05Rik, Mgst1
Downstream geneIgbp1b, EG668196, EG632971
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-514G21.T7 (MSMg01no514_g21.b1)MSMg01-514G21.TJ (MSMg01no514_g21.g1)
ACCAG586917AG586918
length770785
length of high quality
(start - end)		599 (38 - 636)518 (69 - 586)
definitionCHROMAT_FILE: MSMg01no514_g21.b1 PHD_FILE: MSMg01no514_g21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:45:20 2005CHROMAT_FILE: MSMg01no514_g21.g1 PHD_FILE: MSMg01no514_g21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:45:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,408,959 - 138,409,553)(138,511,763 - 138,512,280)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCGTA
GGATCTCCAGGGTTTGTCTTCCTAGGTTCTAGGGAATGTGGAGGATCAAT
TTAGGCTTATGTCCAGGCATAAAGCAATCATCTCTGATTCGCAGGGGTTG
TTACTTTAAGCAGTTGTAGTGGTGTATAATTAGCATCCACTGTACTGAAA
ATATTTCAAGTCTGTACCTGGCAAATTTGTGAAAACCTCAGTATGTGCAA
GAAAATTGAGTATTCACTACTGCTCAAGTTCCCTGCAATCTCTTGGAATC
CTTCATATTCACACTTCCTTCTCTGTACCTACGTTTGAAAACAGCTACTC
TAACTATAGAATAATTACTAATAGGGGTTTTCAATAAATGAAGCCTCAAT
GAACATCCTATCTTATCTGACTTCTTTGGCTCTGCATGATTGATTTGTAT
GTTTCCATGTTTTTTTCTTCTCTTGTTATTGACTGGTAGTCCATTTCTTG
TTAAACTCAAGTCCATGTATCCATTCATAAATATCGTTAATAAGTATTTA
TGTAAGCTCCTGGTTTGGGCTATTCCAAATGAAGATGTCACTGAGATTTT
TCATGCACACGTACTTTGATTTTTAGATCTTTTCCNAGTATTATGAGACA
TACATTGCCATATCTTGCAATTGCTAACATAAGAAGCTCGTTCACATCAA
GAAACCGACAGTGTATGGAATGAGCAGTAATTGTCTTTCTCTCTGTACGA
ATGTACACATCCACCACAAT

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCACAGCACAGAATCTGCAGTGATATTCTGCTA
TGTCTACAAAGCTCTCCATTCAAAGTGGGTGAGCACATCCTCTAGCCAGG
ACTATGCATCCCACAGTCAAAAAGCAAAGCCTTTCCGGAGACATTTCATG
GCATCTGTGACAAAACAGTGGCTCCATCTGGTTCACAGTTTCATTATTCT
TTCAGACAGGTGCACAGCTTGCATGACAGATGTCAATCATTTCTAAGTCC
TTTTCCTATTTCAGTATCATAAGTGTCATTCCAATTATGATTAATCTTAG
AAAGTAATGATTTATAATTTGAAAAGTGGATGACTTTGAATAATTTTTTT
CTTTAACTGGGTGTGATTATAAGCATGTCCCCTTAATGTCATGTGACCAT
GAACACAAGTAACAGAAAGACATGCACTGTTGTTCCTGACTATAGAGAAT
GCATGATGGAGAACCTATGTGCAAGAGTGGGCAAATTTAATTATGTGATT
AATTCTACTTCAAACTCCACTTCTTATTGAAACAGGTTTAGACTTGTCTC
CATGAGTTGTGTTAAGGACATTCATTATTTTCTTCCCCTGAAATGCACGG
CATCACCTTACTGTCCTTGCATAGGCATTAATGACAACAGACAGTGTGTT
CAGAGCCATGAGCTCAATCTGTCTCCTTTTCTTTATTACTCAGGAGTTCT
GCTTCTTANCATGAAGTGGCCTTCTCCTCTGCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no514_g21.b1 MSMg01no514_g21.b1 CHROMAT_FILE:
MSMg01no514_g21.b1 PHD_FILE: MSMg01no514_g21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:20 2005
         (599 letters)



>mm_chr6_138408756_138409754
          Length = 999

 Score = 1073 bits (555), Expect = 0.0
 Identities = 585/595 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcgtaggatctccagggtttgtcttcctaggttctagggaatgtggaggatcaat 63
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaatttgtaggatctccagggtttgtcttcctaggttctagggaatgtggaggatcaat 263

                                                                       
Query: 64  ttaggcttatgtccaggcataaagcaatcatctctgattcgcaggggttgttactttaag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttaggcttatgtccaggcataaagcaatcatctctgattcgcaggggttgttactttaag 323

                                                                       
Query: 124 cagttgtagtggtgtataattagcatccactgtactgaaaatatttcaagtctgtacctg 183
           | |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 324 cggttgtagtggtgtataattagcatccactgtattgaaaatatttcaagtctgttcctg 383

                                                                       
Query: 184 gcaaatttgtgaaaacctcagtatgtgcaagaaaattgagtattcactactgctcaagtt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gcaaatttgtgaaaacctcagtatgtgcaagaaaattgagtattcactactgctcaagtt 443

                                                                       
Query: 244 ccctgcaatctcttggaatccttcatattcacacttccttctctgtacctacgtttgaaa 303
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cccggcaatctcttggaatccttcatattcacacttccttctctgtacctacgtttgaaa 503

                                                                       
Query: 304 acagctactctaactatagaataattactaataggggttttcaataaatgaagcctcaat 363
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 504 acagctactctaactatagagtaattactaataggggttttcaataaatgaagcctcaat 563

                                                                       
Query: 364 gaacatcctatcttatctgacttctttggctctgcatgattgatttgtatgtttccatgt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gaacatcctatcttatctgacttctttggctctgcatgattgatttgtatgtttccatgt 623

                                                                       
Query: 424 ttttttcttctcttgttattgactggtagtccatttcttgttaaactcaagtccatgtat 483
           ||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 624 tttttccctctcttgttattgactggtagtccattgcttgttaaactcaagtccatgtat 683

                                                                       
Query: 484 ccattcataaatatcgttaataagtatttatgtaagctcctggtttgggctattccaaat 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ccattcataaatatcgttaataagtatttatgtaagctcctggtttgggctattccaaat 743

                                                                  
Query: 544 gaagatgtcactgagatttttcatgcacacgtactttgatttttagatcttttcc 598
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gaagatgtcactgaggtttttcatgcacacgtactttgatttttagatcttttcc 798


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space:   582521
Effective search space used:   582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no514_g21.g1 MSMg01no514_g21.g1 CHROMAT_FILE:
MSMg01no514_g21.g1 PHD_FILE: MSMg01no514_g21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:20 2005
         (518 letters)



>mm_chr6_138511563_138512480
          Length = 918

 Score =  963 bits (498), Expect = 0.0
 Identities = 513/518 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacagcacagaatctgcagtgatattctgctatgtctacaaagctctccattcaaagtgg 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 718 cacagcacagaatctgcagtgatattctgctatgtctacaaagttctccattcaaagtgg 659

                                                                       
Query: 61  gtgagcacatcctctagccaggactatgcatcccacagtcaaaaagcaaagcctttccgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 gtgagcacatcctctagccaggactatgcatcccacagtcaaaaagcaaagcctttccgg 599

                                                                       
Query: 121 agacatttcatggcatctgtgacaaaacagtggctccatctggttcacagtttcattatt 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 598 agacatttcatggcatctgtgacaaaacagtggctccgtctggttcacagtttcattatt 539

                                                                       
Query: 181 ctttcagacaggtgcacagcttgcatgacagatgtcaatcatttctaagtccttttccta 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 538 ctttcagacaggtgcacagcttgcatggcagatgtcaatcatttctaagtccttttccta 479

                                                                       
Query: 241 tttcagtatcataagtgtcattccaattatgattaatcttagaaagtaatgatttataat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tttcagtatcataagtgtcattccaattatgattaatcttagaaagtaatgatttataat 419

                                                                       
Query: 301 ttgaaaagtggatgactttgaataatttttttctttaactgggtgtgattataagcatgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ttgaaaagtggatgactttgaataatttttttctttaactgggtgtgattataagcatgt 359

                                                                       
Query: 361 ccccttaatgtcatgtgaccatgaacacaagtaacagaaagacatgcactgttgttcctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ccccttaatgtcatgtgaccatgaacacaagtaacagaaagacatgcactgttgttcctg 299

                                                                       
Query: 421 actatagagaatgcatgatggagaacctatgtgcaagagtgggcaaatttaattatgtga 480
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 accatagagaatgcatgatggagaacctatgtgcaagagtgggcaaatttaattatgtga 239

                                                 
Query: 481 ttaattctacttcaaactccacttcttattgaaacagg 518
           ||||||||||||||||| ||||||||||||||||||||
Sbjct: 238 ttaattctacttcaaaccccacttcttattgaaacagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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