XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAGAA
AAGTTTTCTCATGTTTCCTCCCATTACTCATAGGTATTTGATTTTGTATG
TTTACTTTTTCCTTCCTCTCTTCTAAACTTATGAAATTTAGGGAAAGATT
TTAGAAAAGGGCAACTTATTTCTCTCAAGAGACTTTATTAGTCAGTTTTT
CAAAATTCATTTTAAAGCATTAGTATCATATATGACTTTATTTTTTAAGA
GTTTATATGAAGTGTATTCTACTGTTCGCTGCCTATTCCTTCTGTAATAC
CACACTGTTTTCATACTCATGACAGCAGTTGTCAGATAATTTTGTACAGG
CAATATACACGACCATGTTATATACCGTGTGACATTCCCTGAACTCTTTC
CAGTATTCCTACCAAAAGACACCACCAAAAGTGTTGACCTGAGAAAGTTC
CAGTGTCATCTGTACCCAGACAGAGGTTGCCCTTCCAGTAGCAGCCACAT
GAATGTCATGCCATCTTCAACTGGCAACTTCATCCTCTATCTTGCTGGCC
CCTGGTGGAAAACCATTTTTCCAGACAATTCCAGAAAGTGGAGAGAAGAG
TCCAGAGACCACCTTATGAGAGTCACCAAGCATCCTGCACCAGGTTGACT
CCCAGCTTTCTTTGCCATCTGTTTCAAGAGTACCAGATGGTTGAGTAGCT
GCTCATCTGTCTCGATACAGAAACAGTCCAGGTACCACATGGTCAGACAC
TGAGCTTATTGGCCACTAA

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTGTTGTTGATACTTACAACTATAATTCCTGATCTCTT
TCCTAGGTTTTCCGTTTCCATGTTTGCCTCCATTTGTGTTTTCTTTATTG
TTTCTACTTCTACTTCAAGGTCTTTGACTGCTTTATTCAATTCATTCACC
TGTTTGATTGTGTTTTCCTGTGTTTCTTTAAGGGATTTCTTTCCTCATTA
AGAGTTTCTACCTGTTTACCTTTGTTTTCCTCTATTTCTTTCAGTGAGTT
ATTTATATCCTCCTTAAAAGATTCTATTATCTTCTTGAGATAGGATTTAG
GTCGGCTTCCTGGTTTTCAGGTGTTTTGGTATATTCAGGGCTTGCTGTGA
TGGGAGAACTGGGTTCTGATGATGTCCACATATATTGGCTTCTGTTGCTT
ATGGTCTTGTGCTTGCTTCTCGCCATCTGGTTACCCAGGTGTTTGTTTGC
TGGTCTGGTTGACTCTATCTGGAGTCTGCCTCTTTTGTTCCTTGCTTGCC
TCAGGTCTCCTGGTAGGCCTGCAGTCTTAGCTATAGCAGACCACCTGTGG
GGCCTTCCAACTGGGGCCTCTTCAGAGGGGCAGAGAAGCTGCTGATCTGT
TGCCCTGCCTGCAGTAGATCTCCTGGGAGGCCTTCAGACTGTTGGGTCTT
CAGAGGAGCAATCAAACTGTTGTCTTGTGTGAAGATGTTCTCCAGGGAGG
CCTACAGACTATGGTTTCN

Query= MSMg01no514_n20.b1 MSMg01no514_n20.b1 CHROMAT_FILE:
MSMg01no514_n20.b1 PHD_FILE: MSMg01no514_n20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:55 2005
         (652 letters)



>mm_chr6_7834546_7835598
          Length = 1053

 Score = 1187 bits (614), Expect = 0.0
 Identities = 641/652 (98%), Gaps = 5/652 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctcagaaaag---ttttctcatgtttcctcccattactcataggtatttgattt 60
           ||||||||||||||||     |||||||||||||| ||||||||||||||||||||||||
Sbjct: 204 ggaattctcagaaaagcaa--ttctcatgtttccttccattactcataggtatttgattt 261

                                                                       
Query: 61  tgtatgtttactttttccttcctctcttctaaacttatgaaatttagggaaagattttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tgtatgtttactttttccttcctctcttctaaacttatgaaatttagggaaagattttag 321

                                                                       
Query: 121 aaaagggcaacttatttctctcaagagactttattagtcagtttttcaaaattcatttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aaaagggcaacttatttctctcaagagactttattagtcagtttttcaaaattcatttta 381

                                                                       
Query: 181 aagcattagtatcatatatgactttattttttaagagtttatatgaagtgtattctactg 240
           ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aagcactagaatcatatatgactttattttttaagagtttatatgaagtgtattctactg 441

                                                                       
Query: 241 ttcgctgcctattccttctgtaataccacactgttttcatactcatgacagcagttgtca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ttcgctgcctattccttctgtaataccacactgttttcatactcatgacagcagttgtca 501

                                                                       
Query: 301 gataattttgtacaggcaatatacacgaccatgttatataccgtgtgacattccctgaac 360
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 502 gataattttgtacaggcaatatacacgaccatgtcatataccgtgtgacattccctgaac 561

                                                                       
Query: 361 tctttccagtattcctaccaaaagacaccaccaaaagtgttgacctgagaaagttccagt 420
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 562 tctttccagtattcctaccaaaagacaccacgaaaagtgttgacctgagaaagttccagt 621

                                                                       
Query: 421 gtcatctgtacccagacagaggttgcccttccagtagcagccacatgaatgtcatgccat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gtcatctgtacccagacagaggttgcccttccagtagcagccacatgaatgtcatgccat 681

                                                                       
Query: 481 cttcaactggcaacttcatcctctatcttgctggcccctggtggaaaaccatttttccag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 cttcaactggcaacttcatcctctatcttgctggcccctggtggaaaaccatttttccag 741

                                                                       
Query: 541 acaattccagaaagtggagagaagagtccagagaccaccttatgagagtcaccaagcatc 600
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 742 acaattccagaaagtggagagaagagtccagagaccactttatgagagtcaccaagcatc 801

                                                               
Query: 601 ctgcaccaggttgactcccagctttctttgccatctgtttcaagagtaccag 652
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 ctgcaccaggttgactcccagctttctttgccatctgtttcaagagtaccag 853


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1053
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1043
Effective search space:   669606
Effective search space used:   669606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)