BAC Information

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BAC

Clone NameMSMg01-514P07
Chromosome6 (Build37)
Map Location 129,633,750 - 129,634,406
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043861, Klrb1c, LOC100043862, Klrb1d, LOC667706, Clec2i, Clec2g, LOC667715, BC064078, Clec2f, Klrb1f, Clec2e, Klrb1-ps1, Clec2d, Cd69, 4922502D21Rik, Clec12a, 4933425B16Rik, Clec1b, Clec9a, Clec1a, Clec7a, Olr1, D630042F21Rik, Gabarapl1, Klre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1
Downstream geneLOC640755, Klri1, Klri2, Gm156, Klra17, Klra5, LOC667764, Klra6, LOC100038893, LOC100038894, LOC100038895, Klra4, LOC667769, LOC100038897, Klra8, EG654449, Klra9, Klra7, LOC100038898, Klra12, Klra10, Klra13, Klra3, Klra1, LOC100038902, LOC100038903, LOC625436, EG625473, LOC640779, LOC667793, EG667798
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-514P07.T7 (MSMg01no514_p07.b1)MSMg01-514P07.TJ (MSMg01no514_p07.g1)
ACCAG587314AG587315
length743746
length of high quality
(start - end)		646 (65 - 710)675 (72 - 746)
definitionCHROMAT_FILE: MSMg01no514_p07.b1 PHD_FILE: MSMg01no514_p07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:03 2005CHROMAT_FILE: MSMg01no514_p07.g1 PHD_FILE: MSMg01no514_p07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCGAGGATCCGCGGAATTC
TCCTATGTTCCGACAAAAATCAACTACTGCAGCAGTTGGGATGTGAGGGA
TGCAAGGGGAGGCCTGTTTTTTTCCTTATCCACAACAATAGATTGAACTG
AAGGAGTTATATTTTTGTCATTGCTTTACACACATAGATGTGTTCCTTAT
GTTCTTTTATTTATTTATTTTTCTTCTTGAGACAGTACCTAGCCTAAGTT
GGCCTCAAACCTCATATAAAATTAAAGATGGCCTTAAACTTTTGATCCCC
CACTCCTGCCTCTACCTCACAAGTACTGGGACAACAGGCATGGCATGATG
TTATAGTTAGGGTTTCTATGGTTGTGATGAAATGCTATGACCAAAAGCAA
CTGGGGGAAGAATGCTTTATTTGTCTTATCCTTCTACATTGTCATCTATC
ATTAATAGAAGTCAGGAAAGGAACCCAAGCAGGGCAGAAACCTGGAGGCA
GGAGCTGATTGAGAGGGCAAAAAGGGGTGTTGATTACTGGCTTGCTCAGT
CTGATTTCTTACAGAACCCAGGACCACCAGCTTAGGGTGTGGCCCCATCC
ATAGTGGGTTGGGTATTCCCCATGAATCACTAATTAAGAAAATGCCTTAC
AGGCTTGCCAACAGTCAGATTTTATGGAGGTGACCTCTCAATTGAGACTC
CCTCTCTGATGATCTTAGCTTCTGTTAAGTCAACATAAAACTA

GACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAGGCCCATACCTAAAGATGATAAAAGCA
ATCTACAGCAAACCAGGAGCCAACATCAAAGTAAATGGAGAGAAGCTGGA
AGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCT
ACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTTGACAACAA
AAGGAGATGAAGGGGATACAAATTGGAAAAAAGGAAGTCAAAATATCACT
TTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCCACCA
GAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAA
ATTAACTCAAACAAGTCAATGGCCTTTCTCTACACAAAGAATAAACAGGC
TGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATAATA
TAAAATATCTTGACATGACTCTAACTAAGGAAGTGAAAGATCTGTATGAT
AAAAACTTCAAGTCTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATG
GAAAGATCTCCCATGCTCATGGATTGGCAGGATCTACATTGTAAAAATGG
CTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATT
CCAACTCAATTCTTCAACGAATTGGAAGGAGCAATTTGCAAATTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no514_p07.b1 MSMg01no514_p07.b1 CHROMAT_FILE:
MSMg01no514_p07.b1 PHD_FILE: MSMg01no514_p07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:03 2005
         (646 letters)



>mm_chr6_129633550_129634595
          Length = 1046

 Score = 1208 bits (625), Expect = 0.0
 Identities = 644/657 (98%), Gaps = 11/657 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaaatcaactactgcagcagttgggatgtgagggatgcaaggggaggcctgtttttttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaaatcaactactgcagcagttgggatgtgagggatgcaaggggaggcctgtttttttc 260

                                                                       
Query: 61  cttatccacaacaatagattgaactgaaggagttatatttttgtcattgctttacacaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttatccacaacaatagattgaactgaaggagttatatttttgtcattgctttacacaca 320

                                                                       
Query: 121 tagatgtgttccttatgttcttttatttatttatttttcttcttgagacagtacctagcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagatgtgttccttatgttcttttatttatttatttttcttcttgagacagtacctagcc 380

                                                                       
Query: 181 taagttggcctcaaacctcatataaaattaaagatggccttaaacttttgatcccccact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taagttggcctcaaacctcatataaaattaaagatggccttaaacttttgatcccccact 440

                                                                       
Query: 241 cctgcctctacctcacaagtactgggacaacaggcatggcatgatgttatagttagggtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctgcctctacctcacaagtactgggacaacaggcatggcatgatgttatagttagggtt 500

                                                                       
Query: 301 tctatggttgtgatgaaatgctatg-----------accaaaagcaactgggggaagaat 349
           |||||||||||||||||||||||||           ||||||||||||||||||||||||
Sbjct: 501 tctatggttgtgatgaaatgctatgcttatgctatgaccaaaagcaactgggggaagaat 560

                                                                       
Query: 350 gctttatttgtcttatccttctacattgtcatctatcattaatagaagtcaggaaaggaa 409
           | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggtttatttgtcttatgcttctacattgtcatctatcattaatagaagtcaggaaaggaa 620

                                                                       
Query: 410 cccaagcagggcagaaacctggaggcaggagctgattgagagggcaaaaaggggtgttga 469
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cccaagcagggcagaaacctggaggcaggagctgattgagagggcaaaaaggggtgttga 680

                                                                       
Query: 470 ttactggcttgctcagtctgatttcttacagaacccaggaccaccagcttagggtgtggc 529
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttactggcttgctcagtctgatttcttacagaacccaggaccaccagcttagggtgtggc 740

                                                                       
Query: 530 cccatccatagtgggttgggtattccccatgaatcactaattaagaaaatgccttacagg 589
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cccatccatagtgggttgggtattccccatgaatcactaattaagaaaatgccttacagg 800

                                                                    
Query: 590 cttgccaacagtcagattttatggaggtgacctctcaattgagactccctctctgat 646
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cttgccaacagtcagattttatggaggtgacctctcaattgagactccctctctgat 857


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space:   658896
Effective search space used:   658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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