BAC Information

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BAC

Clone NameMSMg01-515C09
Chromosome6 (Build37)
Map Location 36,712,789 - 36,713,512
singlet/doubletsinglet
Overlap genePtn
Upstream geneLOC100039327, 9330158H04Rik, Chrm2, EG620863, LOC100039370, LOC100039514
Downstream geneDgki, EG665024, Creb3l2, Akr1d1, LOC665046, Ybx1-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-515C09.T7 (MSMg01no515_c09.b1)MSMg01-515C09.TJ (MSMg01no515_c09.g1)
ACCAG587458AG587459
length773782
length of high quality
(start - end)		727 (47 - 773)639 (77 - 715)
definitionCHROMAT_FILE: MSMg01no515_c09.b1 PHD_FILE: MSMg01no515_c09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:20 2005CHROMAT_FILE: MSMg01no515_c09.g1 PHD_FILE: MSMg01no515_c09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGATCCGCG
GAATTCCAAAATAGTTTTCGATTTCCTAGTCCATATACCTTCTCCCATAT
ATCTTATTAGACACAAACCCTGTTTAAAGCTTAGTATCACAAAAGATGCT
TGTCACTAAGGCCCATTAACATTTTCATATAATTTTATTCTCTCCATTTT
CTATCAGTGTAACAAAATAAATGTACTTATGAAATGTTTGCACTATTGAA
ATAAACCTCACTTGGCCATAAAAACACAAATTAAGACACAAAAGGAAGTG
TGGGAAGATATTTCATGGTTTGTTATGCTTTGAGAAGAGGAATGGAAAAT
GGAATTATAGATGACAGCTTTGTCAAAATGCATAAGTGTGCATGTAAATT
AAATATTGAAGTAACTGAATCATTTTGACAGGGACAGACCAAAGGACTAC
TTTCTTAATTTTTCAAACTTTAAGAAGATTGTTTTACTTCACATTTGGAT
GATCATTTTTTGTTGTTTTGGAAGATGATTGCACTGTATAAAAATTCCCC
ACCCATAGACTCTAAATAGAACAGTTTCTATCCATGACAACAGACAGAAG
AAATAGCATTCATGTTTACTTACTGTTACTGTTTAGGGAAGACCAAGGTT
TCTCAGGCTTGTGGGGAATCCTAGTTTTGGACTGTAGACCTCAAGGTTTG
TAGAGAGTGAAGGTCATAGAGATGGGTGCTTAAGCACATGGTCCTAGTAT
GGTGGCCACCTTTGTAAGTCTCT

NCCATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGCTCTGAGCCCCATTT
TTTAATGGGGTTATTTGATTTTCTGGAGTCCATCTTCTTGAGTTCTTTAT
ATATATTGGATATTAGTCCCTATCCGATTTGGGATAGGTAAAGATCCTTT
CCCAATCTGTTGGTGGCCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTG
CAGAAGCTTTGCAATTTTATGAGGTCCCATTTATCAATTCTCGATCTTAC
AGCACAAGCCATTGCTGTTCTATTCAGGAATTTTTCCCCTGTACCCATAT
CTTTGAGGCTTTTCCCTACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGT
TTTATGTGGAGTTCCTTAATCCACTTAGATTTGACCTTAGTACAAGGAGA
TAGAAATGGATGATTTATTTAACATGAAACCTCTTTGAATTATGACTTTT
TGAGGAATTTTAACACTGAATACTGAATGTATATTTAATTAAATTTAGAT
AGTCACTTTTTAGAGTAATAATAGCTTGTACTTAGGTCTTTTAATAGCTT
ATATCTTTTAGAGATAACTACAGATAAAATATGATGCTGGGGCATGTTTC
AAAATGTGGGAAGAAGTTGGTAAGATTAAAATAAAGTAATTGTTCCTAAT
AAATTAATCATTATCAAAGGGTGATGGATAGCTGGGAGTTTTCTACATAA
CTTTGACCTACTTTTGTGCATACATATGAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no515_c09.b1 MSMg01no515_c09.b1 CHROMAT_FILE:
MSMg01no515_c09.b1 PHD_FILE: MSMg01no515_c09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:20 2005
         (727 letters)



>mm_chr6_36712566_36713693
          Length = 1128

 Score = 1323 bits (684), Expect = 0.0
 Identities = 714/728 (98%), Gaps = 9/728 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaaaatagttttc----gatttcctagtccatataccttctcccatatatctta 60
           ||||||||||||||    |    ||||||||||||||||||||||||||||| |||||||
Sbjct: 947 gaattccaaaatag----cccaggatttcctagtccatataccttctcccatgtatctta 892

                                                                       
Query: 61  ttagacacaaaccctgtttaaagcttagtatcacaaaagatgcttgtcactaaggcccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891 ttagacacaaaccctgtttaaagcttagtatcacaaaagatgcttgtcactaaggcccat 832

                                                                       
Query: 121 taacattttcatataa-ttttattctctccattttctatcagtgtaacaaaataaatgta 179
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 taacattttcatataatttttattctctccattttctatcagtgtaacaaaataaatgta 772

                                                                       
Query: 180 cttatgaaatgtttgcactattgaaataaacctcacttggccataaaaacacaaattaag 239
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 cttattaaatgtttgcactattgaaataaacctcacttggccataaaaacacaaattaag 712

                                                                       
Query: 240 acacaaaaggaagtgtgggaagatatttcatggtttgttatgctttgagaagaggaatgg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 acacaaaaggaagtgtgggaagatatttcatggtttgttatgctttgagaagaggaatgg 652

                                                                       
Query: 300 aaaatggaattatagatgacagctttgtcaaaatgcataagtgtgcatgtaaattaaata 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 aaaatggaattatagatgacagctttgtcaaaatgcataagtgtgcatgtaaattaaata 592

                                                                       
Query: 360 ttgaagtaactgaatcattttgacagggacagaccaaaggactactttcttaatttttca 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 ttgaagtaactgaatcattttgacagggacagaccaaaggactactttcttaatttttca 532

                                                                       
Query: 420 aactttaagaagattgttttacttcacatttggatgatcattttttgttgttttggaaga 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 aactttaagaagattgttttacttcacatttggatgatcattttttgttgttttggaaga 472

                                                                       
Query: 480 tgattgcactgtataaaaattccccacccatagactctaaatagaacagtttctatccat 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tgattgcactgtataaaaattccccacccatagactctaaatagaacagtttctatccat 412

                                                                       
Query: 540 gacaacagacagaagaaatagcattcatgtttacttactgttactgtttagggaagacca 599
           ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 411 gacaacagacataagaaatagcattcatgtttacttactgtaactgtttagggaagacca 352

                                                                       
Query: 600 aggtttctcaggcttgtggggaatcctagttttggactgtagacctcaaggtttgtagag 659
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 351 aggtttctcaggcttgtggggaatcctagtttttgactgtagacctcaaggtttgtagag 292

                                                                       
Query: 660 agtgaaggtcatagagatgggtgcttaagcacatggtcctagtatggtggccacctttgt 719
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 agtgaaggtcatagagatgggtgcttaagcacatggtcctagtatggtggccacctttgt 232

                   
Query: 720 aagtctct 727
           ||||||||
Sbjct: 231 aagtctct 224


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 727
Length of database: 1128
Length adjustment: 10
Effective length of query: 717
Effective length of database: 1118
Effective search space:   801606
Effective search space used:   801606
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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