BAC Information

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BAC

Clone NameMSMg01-515M20
Chromosome6 (Build37)
Map Location 19,010,707 - 19,011,326
singlet/doubletsinglet
Overlap geneLOC626180
Upstream geneAsz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneEif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-515M20.T7 (MSMg01no515_m20.b1)MSMg01-515M20.TJ (MSMg01no515_m20.g1)
ACCAG587952AG587953
length772764
length of high quality
(start - end)		642 (74 - 715)625 (79 - 703)
definitionCHROMAT_FILE: MSMg01no515_m20.b1 PHD_FILE: MSMg01no515_m20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:47:16 2005CHROMAT_FILE: MSMg01no515_m20.g1 PHD_FILE: MSMg01no515_m20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:47:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGGATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCC
GGGGAATTCACATTTCATTTCACAAAATGTTTAGCTCCATTTTGACCATG
AGGGCACCATGTTTTCAATAGTAACTTAAAAGAAAAGACATTGTTGCAAT
TATAAAATATTTAAGTTTGAGTTGACCAAAGTATTCTGTAAATTCTTACT
CTAACTTTTCTAAATAAAGATATTGTCTTAAGATGTTATTTTTATTTGGT
ATAGTAGCTATAAAAACATTCTATTTCTTGGCATACCATGTAATCTATGA
ATCAGTAGGATCAATACATCAAGATGAGCACTGCTACATAAAATGAAAAT
GCTAGGGTTATTGGATTATTGTTAGAATTGACATTCTTGCTAAAAATTTC
TTTTTCTTCTCTTAACTTTGCTTTTCAGCCAATTATGACTACTAAAGGCA
GTAACAGTAAAGAATCTGAAATAACAACAAAAAATTAACTAACCATACGT
CTTTCCACAAGTGCTTCTTGTCACCATTTTACAGTCATGTCCTTCTAAAT
GTCTTATCACATACCTAAATAATCACCTACAGACCATGAATCTTTATGCA
ATTGACAAATGGTTTGCTATCTCTAGCAAAATGCACAATCAGTTTCAACA
ACTTAAGATCCAAGAACTGGGACGATTTTCTTTCATAATTTTCCCTCAGG
GACTTTGGATGACTACAGATCTGTGTCTGATTACATTCACAAGTGCCTAC
ATATTGCACAGAACCACCTATA

NNAACAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGACCCCCAT
TTTTAATGGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTA
TATATATTGGATATTAGTCCCCTATCTGATTTAGGATTGGTAAAGATCCT
TTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGAAGGTGTCTTTTGCCT
TGCAGAAGCTTTGCAATTTTATGAGGTCCCATTTGTTGATTCTCGATCTT
ACAGCTCAAGCCATTGCTGTTCTATTCAGGAATTTTTCCCCTATACCCAT
ATCTTCGAGGCTTTTCCCTACTTTCTCCTCTATAAGTTTCAGTGTCTCTG
GTTTTATGTGGAATTCCTTAATCCACTTAGATTTGACCTTAGTACAAGGA
GATAGGAATGGGTCAACTGGCATTCTTCTACATGATAACCGCCAGTTGTG
CCAGCACCATATGTTGAAAATGCTGTTTTTTTCCACTGGATGGTTTTTGC
TGCCTTGTCAAATATCAAATGACCATAGGTGTGTGGGTTCATCTCTGGGT
CTTCAATTCTATTCCATTGGTCTACTTTTCTGTTGCTATACCAGTACCAT
GAAGTTTTTATCACAATTGCTCTGTAGTACAGCTTTAGGTTAGGCATGGT
GATTCCATGAGAAGAGTTTTTGCTATTCTAGATTTTTTTTTTATTCCAGA
TGAATTTGCAGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no515_m20.b1 MSMg01no515_m20.b1 CHROMAT_FILE:
MSMg01no515_m20.b1 PHD_FILE: MSMg01no515_m20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:16 2005
         (642 letters)



>mm_chr6_19010707_19011748
          Length = 1042

 Score = 1087 bits (562), Expect = 0.0
 Identities = 596/620 (96%), Gaps = 20/620 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaatgtttagctccattttgaccatgagggcaccatgttttcaatagtaacttaaaaga 60
           |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 620 aaaatgtttagctccatttttaccatgaggtcaccatgttttcaatagtaacttaaaaga 561

                                                                       
Query: 61  aaagacattgttgcaattataaaatatttaagtttgagttgaccaaagtattctgtaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aaagacattgttgcaattataaaatatttaagtttgagttgaccaaagtattctgtaaat 501

                                                                       
Query: 121 tcttactctaacttttctaaataaagatattgtcttaagatgttatttttatttggtata 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 500 tcttactctaacttttctaaataaagatattgtcttaggatgttatttttatttggtata 441

                                                                       
Query: 181 gtagctataaaaacattctatttcttggcataccatgtaatctatgaatcagtaggatca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gtagctataaaaacattctatttcttggcataccatgtaatctatgaatcagtaggatca 381

                                                                       
Query: 241 atacatcaagatgagcactgctacataaaatgaaaatgctagggttattggattattgtt 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 atacatcacgatgagcactgctacataaaatgaaaatgctagggttattggattattgtt 321

                                                                       
Query: 301 agaattgacattcttgctaaaaatttctttttcttctcttaactttgcttttcagccaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agaattgacattcttgctaaaaatttctttttcttctcttaactttgcttttcagccaat 261

                                                                       
Query: 361 tatgactactaaaggcagtaacagtaaagaatctgaaataacaacaaaaaattaactaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tatgactactaaaggcagtaacagtaaagaatctgaaataacaacaaaaaattaactaac 201

                                                                       
Query: 421 catacgtctttccacaagtgcttcttgtcaccattttacagtcatgtcctt--------- 471
           |||||||||||||||||||||||||||||||||||||||||||||||||||         
Sbjct: 200 catacgtctttccacaagtgcttcttgtcaccattttacagtcatgtccttctaaatgtc 141

                                                                       
Query: 472 -----------ctaaatgtcttatcacatacctaaataatcacctacagaccatgaatct 520
                      |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 ttatcacatacctaaatgtcttatcacatacctaaataatcacctacagaccatgaatct 81

                                                                       
Query: 521 ttatgcaattgacaaatggtttgctatctctagcaaaatgcacaatcagtttcaacaact 580
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80  ttatgcaattgacaaatggtttgctatctctagcaaaatgcacaatcagtttcaacaact 21

                               
Query: 581 taagatccaagaactgggac 600
           ||||||||||||||||||||
Sbjct: 20  taagatccaagaactgggac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space:   652224
Effective search space used:   652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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