BAC Information

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BAC

Clone NameMSMg01-516G20
Chromosome6 (Build37)
Map Location 113,664,167 - 113,810,076
singlet/doubletdoublet
Overlap geneGhrl, Sec13, Atp2b2
Upstream geneSrgap3, EG666387, EG620161, LOC666397, Thumpd3, EG434078, Setd5, Lhfpl4, Mtmr14, Cpne9, Brpf1, Ogg1, Camk1, Tada3l, Arpc4, Ttll3, Rpusd3, Cidec, Jagn1, Il17re, Il17rc, Creld1, Prrt3, Tmem111, Fancd2, 4931417G12Rik, 6720456B07Rik, Vhlh, Irak2, Tatdn2
Downstream geneSlc6a11, LOC666491, Slc6a1, Hrh1, Atg7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-516G20.T7 (MSMg01no516_g20.b1)MSMg01-516G20.TJ (MSMg01no516_g20.g1)
ACCAG588425AG588426
length765780
length of high quality
(start - end)		685 (50 - 734)596 (82 - 677)
definitionCHROMAT_FILE: MSMg01no516_g20.b1 PHD_FILE: MSMg01no516_g20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:48:09 2005CHROMAT_FILE: MSMg01no516_g20.g1 PHD_FILE: MSMg01no516_g20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:48:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,809,396 - 113,810,076)(113,664,167 - 113,664,762)
sequence
NNNAACCTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTGTGGGTGATCTCCTGTGTGTCCACTTGCTGTGTGCCAGC
TGCATCCGTGAGATCTGAGCACCGAGTCTGGAGCTGCTGTCAAAGGCCTT
GGGAGCACACGCGGCCGGCCAAGTCTTATGGATGGTTTAGTGGACTCTGC
CTGGAGGGTGGAGTCAGCATGTGATTGGCTGAGGAAGGGTCTATGGAGCT
GGGCTATACCTGGCTAAGAAGCTACAGCGCGTGCTCAAGCATAGTGGACG
GTCCAGAAAGGGTCTCTGAGTTGATCTTTCATGGTTTTATGGAATGAGAA
ACTCTCCACACGTGGATTTTGAGCAGATAGGATGATGATTTCCTTCAGGG
GGTACTCACGTGCCCACTGGGGCAGAGGGTAGGATGTGTGAGCCGGGGAG
TCCACTTGTCTATGTCAAAGTCCTAGTGGGAGCTAGTGTTGAATTGTTAG
AACCACCTAGCCTGACTTTCCTTTGGGAGAGATAGGCAAACTGAGGCCTA
AGGAGGGGGAAATGGTGGAGCAGGGACAGTCAACTGTGGCTTGTCCATGG
CATGGTTGCTAGTGATGTCATGAAGATGTGTATTCTATGCATGGCCATAA
GCCTTGAGGTCACACCTGCTGGTACTGCTGCTGCATGTGGCCCTCACCAC
AGAGCTTTGAATCCTTCTAGCCTCAATTTTCTCACCTGTGAAATGGGAAT
AACAAGTGGATCCTT

NNNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTATAAGTAGAATTGCT
GTAAAAATGGACGGAAATTAAATTCATCTGTTTGATTGTTCATGGTAGGA
TCACTGAATGGTGGCTGTTAGGACCGTTGTGTACCTGTTTACCCTTGTGC
TAGAGATCCTGGGTTCTGCTTTGGGAATGCGTACGGCAGAGAGGAGCTGG
AGAAGTGCAAGGTGTGGGCTGTACAGCTGGTGCTCAGATCCATCTCTGCT
CACAGTGAACTACTTGGGGTATAGAGTCTGGCCAGAGTGTGTTCAGCATC
TGCTTCGAATGACTACAGGGCACAGGAAGGGAAAGGAGAAGTACTTATTT
TTGGTAAGGGAAGCATCATGTGACCAACTGTCCTTTCAAGGTCTTTCCCT
CCATTTGCTAAGTCCCTTCCTTTACTTCTGCTCTGCAATGTGTTATAGTG
GTCATTTGTGACAAAAGTCTTGCTGCCTGTGCTATTCCGACAGGTGCTGT
TGGTAGAAAGGGCAGCAGGGCATTGGTGCTGTTGTGTATCCTAGGGATAA
GCCTAGTTGATACCAGTGAGTATTGCAAAGACAGGGGAGGGAGAATGAAA
CTGGCAGCATTAGTATTTCTACTGCTGTGATACAACACCTTGACTAAAAG
CAACTTGAGGGAGAAGGGTTTATTTCAGCTCACAGGTTACAGTCTACCAC
TGAGAGGAGCCAAGGTAGGAATTCCAGACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no516_g20.b1 MSMg01no516_g20.b1 CHROMAT_FILE:
MSMg01no516_g20.b1 PHD_FILE: MSMg01no516_g20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:09 2005
         (685 letters)



>mm_chr6_113809192_113810276
          Length = 1085

 Score = 1286 bits (665), Expect = 0.0
 Identities = 677/681 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctgtgggtgatctcctgtgtgtccacttgctgtgtgccagctgcatccgtgaga 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 885 gaattcctgtgggtgatctcctgtgtgtccacttgctgtgtgccagctgcattcgtgaga 826

                                                                       
Query: 65  tctgagcaccgagtctggagctgctgtcaaaggccttgggagcacacgcggccggccaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 tctgagcaccgagtctggagctgctgtcaaaggccttgggagcacacgcggccggccaag 766

                                                                       
Query: 125 tcttatggatggtttagtggactctgcctggagggtggagtcagcatgtgattggctgag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 tcttatggatggtttagtggactctgcctggagggtggagtcagcatgtgattggctgag 706

                                                                       
Query: 185 gaagggtctatggagctgggctatacctggctaagaagctacagcgcgtgctcaagcata 244
           |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 705 gaagggtctatggagctgggctatacctggctaagaagctacagtgcatgctcaagcata 646

                                                                       
Query: 245 gtggacggtccagaaagggtctctgagttgatctttcatggttttatggaatgagaaact 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 gtggacggtccagaaagggtctctgagttgatctttcatggttttatggaatgagaaact 586

                                                                       
Query: 305 ctccacacgtggattttgagcagataggatgatgatttccttcagggggtactcacgtgc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 ctccacacgtggattttgagcagataggatgatgatttccttcagggggtactcacgtgc 526

                                                                       
Query: 365 ccactggggcagagggtaggatgtgtgagccggggagtccacttgtctatgtcaaagtcc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 ccactggggcagagggtaggatgtgtgagccggggagtccacttgtctatgtcaaagtcc 466

                                                                       
Query: 425 tagtgggagctagtgttgaattgttagaaccacctagcctgactttcctttgggagagat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 tagtgggagctagtgttgaattgttagaaccacctagcctgactttcctttgggagagat 406

                                                                       
Query: 485 aggcaaactgaggcctaaggagggggaaatggtggagcagggacagtcaactgtggcttg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 aggcaaactgaggcctaaggagggggaaatggtggagcagggacagtcaactgtggcttg 346

                                                                       
Query: 545 tccatggcatggttgctagtgatgtcatgaagatgtgtattctatgcatggccataagcc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tccatggcatggttgctagtgatgtcatgaagatgtgtattctatgcatggccataagcc 286

                                                                       
Query: 605 ttgaggtcacacctgctggtactgctgctgcatgtggccctcaccacagagctttgaatc 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 ttgaggtcacacctgctggtactgctgctgcatgtggccctcaccacagagctttgaatc 226

                                
Query: 665 cttctagcctcaattttctca 685
           |||| ||||||||||||||||
Sbjct: 225 cttcaagcctcaattttctca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space:   725625
Effective search space used:   725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no516_g20.g1 MSMg01no516_g20.g1 CHROMAT_FILE:
MSMg01no516_g20.g1 PHD_FILE: MSMg01no516_g20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:09 2005
         (596 letters)



>mm_chr6_113663967_113664962
          Length = 996

 Score = 1106 bits (572), Expect = 0.0
 Identities = 590/596 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttataagtagaattgctgtaaaaatggacggaaattaaattcatctgtttgattgttc 60
           ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 tcttagaagtagaattgctgtaaaaatggacggaaatgaaattcatctgtttgattgttc 260

                                                                       
Query: 61  atggtaggatcactgaatggtggctgttaggaccgttgtgtacctgtttacccttgtgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atggtaggatcactgaatggtggctgttaggaccgttgtgtacctgtttacccttgtgct 320

                                                                       
Query: 121 agagatcctgggttctgctttgggaatgcgtacggcagagaggagctggagaagtgcaag 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 agagatcctgggttctgctttgggaatgagtacggcagagaggagctggagaagtgcaag 380

                                                                       
Query: 181 gtgtgggctgtacagctggtgctcagatccatctctgctcacagtgaactacttggggta 240
           |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 381 gtgtgggctgtacagctggtgctcagattcatctctgcccacagtgaactacttggggta 440

                                                                       
Query: 241 tagagtctggccagagtgtgttcagcatctgcttcgaatgactacagggcacaggaaggg 300
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 tagagtctggccagagtgtgttcagcatctgctttgaatgactacagggcacaggaaggg 500

                                                                       
Query: 301 aaaggagaagtacttatttttggtaagggaagcatcatgtgaccaactgtcctttcaagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaggagaagtacttatttttggtaagggaagcatcatgtgaccaactgtcctttcaagg 560

                                                                       
Query: 361 tctttccctccatttgctaagtcccttcctttacttctgctctgcaatgtgttatagtgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctttccctccatttgctaagtcccttcctttacttctgctctgcaatgtgttatagtgg 620

                                                                       
Query: 421 tcatttgtgacaaaagtcttgctgcctgtgctattccgacaggtgctgttggtagaaagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcatttgtgacaaaagtcttgctgcctgtgctattccgacaggtgctgttggtagaaagg 680

                                                                       
Query: 481 gcagcagggcattggtgctgttgtgtatcctagggataagcctagttgataccagtgagt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcagcagggcattggtgctgttgtgtatcctagggataagcctagttgataccagtgagt 740

                                                                   
Query: 541 attgcaaagacaggggagggagaatgaaactggcagcattagtatttctactgctg 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 attgcaaagacaggggagggagaatgaaactggcagcattagtatttctactgctg 796


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space:   577796
Effective search space used:   577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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