Query= MSMg01no516_k18.b1 MSMg01no516_k18.b1 CHROMAT_FILE:
MSMg01no516_k18.b1 PHD_FILE: MSMg01no516_k18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:30 2005
(614 letters)
>mm_chr6_108460747_108461760
Length = 1014
Score = 888 bits (459), Expect = 0.0
Identities = 494/511 (96%), Gaps = 12/511 (2%)
Strand = Plus / Minus
Query: 116 agttacatgtg-t--a-acagtatccctgcgaggaaaaccttcttctcaactt------- 164
||||||||||| | | ||||||||||||||||||||||||||||||||||||
Sbjct: 1014 agttacatgtgatccatacagtatccctgcgaggaaaaccttcttctcaacttggaagga 955
Query: 165 -ggaaggaaggaaggaaggaaactgagacagacaaaagcagcttagaaaccatacatcgg 223
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 954 aggaaggaaggaaggaaggaaactgagacagacaaaagcagcttagaaaccatacatggg 895
Query: 224 ttttccttaaggacgtttcacgatccctattgtctaaatcctttcattcctttcctttcc 283
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 894 ttttccttaaggacgtttcacaatccctattgtctaaatcctttcattcctttcctttcc 835
Query: 284 tttcctttccttccatttccctaccccccctctcttattttgagtccttggatatttttt 343
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 834 tttcctttccttccatttccctaccccccctctcttatttttagcccttggatatttttt 775
Query: 344 ttgatcttcatatttttatatttcttgtgtttgcaccataaaagtttatgcttcttgcca 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 ttgatcttcatatttttatatttcttgtgtttgcaccataaaagtttatgcttcttgcca 715
Query: 404 tgttatgtaggtgcactgaaatttcttatccccaattttatagatctaggtttcttttga 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 tgttatgtaggtgcactgaaatttcttatccccaattttatagatctaggtttcttttga 655
Query: 464 ctttggcacagaaaatcattatttggtttataacttaatctgctcccaagaaagggacag 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 ctttggcacagaaaatcattatttggtttataacttaatctgctcccaagaaagggacag 595
Query: 524 aaccaactcaccaactgccaaggtcttaacaacttggctctatgggaacaaaatcacttt 583
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 aaccaactcaccaactgtcaaggtcttaacaacttggctctatgggaacaaaatcacttt 535
Query: 584 tacttagcaagctcactgtcctgggtcctgg 614
|||||||||||||||||||||||||||||||
Sbjct: 534 tacttagcaagctcactgtcctgggtcctgg 504
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space: 606416
Effective search space used: 606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no516_k18.g1 MSMg01no516_k18.g1 CHROMAT_FILE:
MSMg01no516_k18.g1 PHD_FILE: MSMg01no516_k18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:30 2005
(556 letters)
>mm_chr6_108277241_108278196
Length = 956
Score = 1067 bits (552), Expect = 0.0
Identities = 555/556 (99%)
Strand = Plus / Plus
Query: 1 tttgggtttggttaaaaagtgtaagcttgaaaataaatttcaaaggtggtttttaagact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgggtttggttaaaaagtgtaagcttgaaaataaatttcaaaggtggtttttaagact 260
Query: 61 ttctattgaacaaagagtaaaacctggagactggagaacggtcggacgtgcagcgccgac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctattgaacaaagagtaaaacctggagactggagaacggtcggacgtgcagcgccgac 320
Query: 121 cttcagcagtgacgagccagcaccttgcttcatggacttgattaacgtgatgtcatttcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttcagcagtgacgagccagcaccttgcttcatggacttgattaacgtgatgtcatttcc 380
Query: 181 agacattgtgttatttggtttgagaggacattttcaagttgcttccaattccagctgttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agacattgtgttatttggtttgagaggacattttcaagttgcttccaattccagctgttg 440
Query: 241 gggtagaatcggcaacccaggaaagccgtcctgtgctctgttgcaggccccctgggccaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggtagaatcggcaacccaggaaagccgtcctgtgctctgttgcaggccccctgggccaa 500
Query: 301 aagggatcaggcctgaaaaactgcattgcctgagtgagtctgtgttggtgacacagaaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagggatcaggcctgaaaaactgcattgcctgagtgagtctgtgttggtgacacagaaga 560
Query: 361 ctgaagccataggggaaattggtgatgtcatctctctcgctttcccctccccttcccact 420
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgaagccataggggaagttggtgatgtcatctctctcgctttcccctccccttcccact 620
Query: 421 cccaaccctgaaccctgaccaaacaaagcatatttttctagtgatagaaatcagacactt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cccaaccctgaaccctgaccaaacaaagcatatttttctagtgatagaaatcagacactt 680
Query: 481 ttgacctttttcttgaagggaaattttgtttttcttcttccttttccttatcagcaagat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttgacctttttcttgaagggaaattttgtttttcttcttccttttccttatcagcaagat 740
Query: 541 cttccttttcatggaa 556
||||||||||||||||
Sbjct: 741 cttccttttcatggaa 756
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space: 516516
Effective search space used: 516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
